Detailed information on CNT30156257


BLAST search results

BLAST vs Swiss-Prot:
sp|P48386|CHS1_CAMSI, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30647274Pistacia veraRosa chinensis59.9749.4581.28860forward
CNT30355633Pistacia veraLactuca sativa13.1834.6284.66189forward
CNT3022855Pistacia veraPopulus trichocarpa46.1695.5383.38662forward

Expression of CNT30156257

Peptides detected in this lncRNA

>peptide 1 (76 aa)
ATLWRTIVSTVSPGPNPKRTPHSRPSPVVFNPLSVDFLLISSKINKTQALDMLPYSESTCLVAPNFSSLRPNLIST*

>peptide 2 (29 aa)
NTVEDDCLNSKSGSESKENSPFKTFSCGL*

>peptide 3 (37 aa)
MYSQTFGFSFKISSVKYMYRFLIMDFSPEIHDKRSSV*

>peptide 4 (38 aa)
MTLLPILVDTTMLSYLFHSNYNSSGILSPNCLPSIISKR

>peptide 5 (38 aa)
MRNISAQNKQKTEKRKENDSFAYFGRYNYAILFISFQL*

Sequence

>CNT30156257
GCAACACTGTGGAGGACGATTGTCTCAACAGTAAGTCCGGGTCCGAATCCAAAGAGAACTCCCCATTCAAGACCTTCTCCTGTGGTCTTTAATCCACTTT
CAGTTGATTTCCTTCTCATTTCGTCCAAAATAAACAAGACACAGGCGCTTGACATGTTACCGTACTCGGAAAGCACATGTCTTGTGGCACCTAACTTCTC
TTCCTTAAGGCCCAATTTGATTTCAACTTGATCCAAAATTGCCGGACCACCAGGGTGTGCAATCCAGAAAAGTGAGTTCCAATCTGAGATACCCAAAGGC
TTGAATGCCTCAACCAAACTCTTCTCAATGTTCTTTGAAATAAGCCCGGGAACATCTTTCAAAAGGTGAAATGTAAGCCCAACTTCACGGAGATGCCCAT
CAATAGCCCCATCGCTATCAGGCAAAATTGTTTGAGCCGTAGAGACTAATTCAAACAGGGGTTTCTCGACTCCAGGCACTGGGTCCGAGCCGACAATGAC
AGCAGCTGCACCATCGCCAAACAAAGCTTGACCCACAAGACTGTCAAGGTGGGTGTCACTAGGACCACGGAAAGTAACAGCAGTAATTTCTGAGCAGACA
ACAAGGACACGAGCACCTTTGTTGTTCTCTGCTAAATCTTTGGCAAGGCGAAGAACCGTGCCACCAGCAAAGCAACCTTGTTGGTACATCATGTAACGCT
TAACAGAAGGACGAAGACCCAAGAGCTTGGTGAGCTGGTAGTCAGCACCAGGCATGTCAACACCACTGGTGGTGCAAAACACCAAGTGGGTGATTTTGGA
TTTGGGCTGACCCCATTCCTTAATAGCCTTGGTGGCTGCTTCTTTGCCTAGCTTTGGTACCTCGACCACCACCATATCTTGCCTGGCATCTAGTGAAGGT
GCCATGTATTCGCAAACTTTTGGGTTTTCTTTCAAAATCTCCTCGGTCAAGTACATGTATCGCTTCTTGATCATGGATTTTTCACCTGAAATACATGACA
AAAGAAGTTCAGTTTAAATATATTGATGCAAAACGAGTATAGTATCATATTAGTATGGTAATATCTTGATTTAAAGCTTACTAGGTTGATGAGGATAAAA
TGATTTTATGGAAATTATTGTAGTGTTAATTATCATGATAGATCATCTTAAGTGTAGCAGTATATTTTTTTTTGTCTATTGAGTCGGAAATACAAAAAAA
TTCATTTTGTTTTTAAGGGTATACTGTTAACTTTAGAGTTTTGACTTTTGACTAATGGGTTGGATATGAGAAATATTTCTGCCCAAAATAAACAAAAAAC
AGAGAAAAGAAAAGAAAATGACTCTTTTGCCTATTTTGGTAGATACAACTATGCTATCTTATTTATTTCATTCCAATTATAATTCATCTGGAATATTATC
TCCTAACTGTCTCCCTTCAATTATTTCTAAAAGG