CANTATAdb - search

Detailed information on CNT30156148

BLAST search results

BLAST vs Swiss-Prot:
sp|P69325|UBIQP_SOYBN, E-value = 2e-159

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-159

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30316435	Pistacia vera	Corylus avellana	67.61	80.94	85.48	620	forward
CNT30377699	Pistacia vera	Arabidopsis thaliana	70.99	76.32	83.87	651	forward
CNT3096742	Pistacia vera	Solanum tuberosum	73.83	59.02	85.23	677	forward
CNT30408298	Pistacia vera	Papaver somniferum	74.05	47.48	83.95	679	forward
CNT30111740	Pistacia vera	Ficus carica	72.52	57.23	84.66	665	forward

Expression of CNT30156148

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSKVIVLPVRVLTKICIPPRRRRTKWSVDSFWIL*

>peptide 2 (61 aa)
MTNSETPTETEHKMQGGLLLNVVISKGPSILKLLPSKNQPLLVWWDPLLILDLSLNIVNGI*

>peptide 3 (36 aa)
MPSLSCILALTLSIVSELSTSKVIVFPVRVFTKICIP

Sequence

>CNT30156148
TTAATATAAGTTCTTAGAACTGATATACATGATCTAAAGAACGCCCATATCAGCATCTAAGAAACACAGCGCAAAAAGCATAAAAACTAAAAAACTTAAA
ATAGAGTTTTTACAACTTATTTAAGACATTAAATATTGGCCAGCGGCCAGACCACACCACACAAACAACCACATATCCAACATAATGGAAACAAACCAGA
TTCAAATAAGCACATGACCAATTCAGAAACCCCCACGGAGACGGAGCACAAGATGCAGGGTGGACTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCC
ATCCTCAAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTATCCTGGATCTTAGCCTTAACATTGTCAATGGTATCTGAA
CTCTCAACCTCCAAGGTGATTGTCTTACCAGTGAGGGTCTTGACAAAAATCTGCATACCACCACGGAGACGAAGGACCAAGTGGAGTGTGGATTCCTTCT
GGATATTATAGTCTGCAAGTGTCCTCCCATCTTCAAGCTGCTTACCAGCAAAAATGAGCCTCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATTTT
GGCTTTCACATTGTCAATTGTGTCAGAACTCTCAACCTCCAAGGTAATGGTCTTCCCAGTGAGGGTCTTCACAAAAATCTGCATACCACCTCGGAGACGA
AGAACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTACGACCATCCTCAAGTTGTTTACCGGCAAAGATCAGCCTCTGCTGGTCCG
GTGGGATGCCCTCCTTGTCCTGTATCTTGGCCTTAACATTGTCAATAGTGTCAGAGCTCTCAACTTCCAAGGTAATAGTTTTTCCAGTAAGGGTCTTCAC
AAAGATTTGCATCCCAC