CANTATAdb - search

Detailed information on CNT30156103

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG84|UBI4P_NICSY, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30532219	Pistacia vera	Eucalyptus grandis	80.49	56.66	83.53	953	forward
CNT30709517	Pistacia vera	Glycine max	75.25	95.91	84.62	891	forward
CNT30637458	Pistacia vera	Capsicum annuum	80.32	21.66	83.81	951	forward
CNT3097337	Pistacia vera	Solanum tuberosum	80.32	83.79	83.18	951	forward
CNT3066849	Pistacia vera	Leersia perrieri	77.28	68.49	82.51	915	forward
CNT30623044	Pistacia vera	Daucus carota	78.46	47.11	83.96	929	forward
CNT30418420	Pistacia vera	Papaver somniferum	80.32	55.32	82.44	951	forward
CNT3028051	Pistacia vera	Theobroma cacao	79.22	76.95	83.8	938	forward

Expression of CNT30156103

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MVSELSTSRVIVFPVRGLHKICIPPRRRRTKWRVDSF

>peptide 2 (31 aa)
MVSELSTSRVIVFPVRVFTKICIPPLRRRTK*

>peptide 3 (40 aa)
MVSELSTSKVIVLPVRVLTKICIPPRRRRTKWSVDSFWIL*

>peptide 4 (61 aa)
MTNSETPTETEHKMQGGLLLNVVISKGPSILKLLPSKNQPLLVWWDPLLILDLSLNIVNGI*

Sequence

>CNT30156103
TTAATATAAGTTCTTAGAACTGATATACATGATCTAAAGAACGCCCATATCAGCATCTAAGAAACACAGCGCAAAAAGCATAAAAACTAAAAAACTTAAA
ATAGAGTTTTTACAACTTATTTAAGACATTAAATATTGGCCAGCGGCCAGACCACACCACACAAACAACCACATATCCAACATAATGGAAACAAACCAGA
TTCAAATAAGCACATGACCAATTCAGAAACCCCCACGGAGACGGAGCACAAGATGCAGGGTGGACTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCC
ATCCTCAAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTATCCTGGATCTTAGCCTTAACATTGTCAATGGTATCTGAA
CTCTCAACCTCCAAGGTGATTGTCTTACCAGTGAGGGTCTTGACAAAAATCTGCATACCACCACGGAGACGAAGGACCAAGTGGAGTGTGGATTCCTTCT
GGATATTATAGTCTGCAAGTGTCCTCCCATCTTCAAGCTGCTTACCAGCAAAAATGAGCCTCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGGATTTT
GGCTTTCACATTGTCAATTGTGTCAGAACTCTCAACCTCCAAGGTAATGGTTTTTCCAGTAAGGGTTTTCACAAAGATCTGCATACCACCCCTGAGTCGA
AGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGTGTGCGTCCATCCTCAAGTTGTTTGCCAGCGAAGATAAGCCTCTGCTGGTCTG
GTGGGATTCCTTCCTTATCCTGAATTTTGGCTTTGACATTGTCAATGGTGTCAGAGCTTTCCACCTCAAGGGTGATTGTCTTTCCAGTGAGGGTTTTCAC
GAAGATCTGCATACCACCCCTTAGACGGAGGACCAAGTGAAGGGTTGACTCTTTCTGGATGTTATAATCTGCAAGTGTACGCCCATCCTCGAGTTGTTTA
CCAGCAAAGATAAGCCTTTGCTGGTCTGGCGGGATCCCTTCCTTGTCCTGAATTTTGGCCTTGACATTGTCAATGGTGTCAGAGCTTTCAACCTCAAGGG
TGATTGTCTTTCCGGTGAGAGGTCTTCACAAAATCTGCATACCACCTCGGAGGCGAAGAACCAAGTGGAGGGTTGACTCCTTCT