CANTATAdb - search

Detailed information on CNT30155137

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9THV5|RPOC2_SINAL, E-value = 2e-18

BLAST vs NONCODE:
NONVVIT002936, E-value = 4e-69

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30703171	Prunus persica	Quercus lobata	35.12	2.03	92.56	242	forward
CNT3045209	Prunus persica	Prunus dulcis	39.91	94.83	97.45	275	reverse complement
CNT3085458	Prunus persica	Vigna radiata	22.79	44.35	90.45	157	forward
CNT30234601	Prunus persica	Brassica oleracea	21.04	30.79	92.41	145	forward
CNT30314046	Prunus persica	Camelina sativa	32.22	5.79	90.54	222	forward
CNT3082978	Prunus persica	Brassica juncea	30.33	2.57	91.39	209	forward

Expression of CNT30155137

Peptides detected in this lncRNA

>peptide 1 (94 aa)
MKYMYDNPPFILFVLLVIILLLSYKFIKFTKKGFITNSQRIHYNNTTQQKGFLVFGWGGKRGGWVLGLILGRHRKMQDLVNQFHRRKNSLFYFV*

Sequence

>CNT30155137
ATTACTAAAATCCAATAAATATGTAAATAAATGGACCTATAGATCTTTCTACATGTTTCTACATGAAATATATGTATGATAATCCACCCTTTATATTATT
CGTATTATTAGTTATTATCTTGTTATTATCTTATAAATTTATAAAATTTACTAAAAAAGGATTTATTACAAATTCTCAAAGAATTCATTATAATAATACG
ACTCAACAAAAAGGATTTTTAGTTTTTGGGTGGGGAGGGAAGAGGGGAGGATGGGTGTTGGGGTTGATTTTGGGGAGACATAGAAAGATGCAAGACCTTG
TTAACCAATTTCACAGAAGAAAGAATTCACTCTTTTATTTTGTTTAATAGGGATTTTCTAGTTAGTAACCAAGAATATCTTTACTTGATCCAGGATGTGT
GATGTATATGCCATTCCGAAGTGATCTATTAATCTCCTAATAATTCGTTTAATAGCAGTTTCATCTATCACTTTATTGTGAAAGACCAGATTGGCCCATT
CTGCCATAAGTACCTCCCTATTCCGCTGAGTGGGGTTCGACAATGGGTTTGAGTCAACGATTGGAAAACTTCATTTTCTCAATCTTTATTCGCATAGAAA
TTCAGTAACTATGGTCCTAGGTGAACTGCGGAAACCCAAACTCACACGGGTGTCATAGAATTACTTCGCTTAGATACCATATGAGTAGG