« Back to Zea mays search


Detailed information on CNT3015512


BLAST search results

BLAST vs Swiss-Prot:
sp|O22914|CP121_ARATH, E-value = 2e-27

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674439Zea maysSetaria viridis15.4756.687.22133forward
CNT30523223Zea maysSetaria italica27.6747.7986.97238forward
CNT30290105Zea maysTriticum aestivum18.7235.4684.47161forward
CNT30387749Zea maysTriticum turgidum27.3336.8981.7235forward
CNT30592246Zea maysMusa acuminata16.424.0685.82141forward
CNT30246208Zea maysAvena sativa16.5125.0483.8142forward
CNT30659185Zea maysTriticum dicoccoides27.3344.0981.28235forward
CNT30134237Zea maysLolium perenne26.9836.8883.19232forward
CNT30580422Zea maysEchinochloa crusgalli27.5635.3286.08237forward
CNT30497736Zea maysDigitaria exilis27.3333.8683.83235forward
CNT30557621Zea maysPanicum hallii25.9340.6287223forward

Expression of CNT3015512

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MFMCALCIVQRKCQLAANWLEITRRCRIPCEMQSIRQSIIPDFKHAWHMKLTQNISIPSQLCITYHTGCGGGR*

>peptide 2 (57 aa)
MTRRSRVSFFRSVLQPSSFMSMAYIAIRLASCRRCGTPRSPGCPCSTSRAGRWRWSP*

>peptide 3 (89 aa)
MRHSSESGLSLQYFSSGSLALVSLRLSRAWLAVALSSSTSSHAAAHSASPFWSSAHVSSACLMLSDTLSEISGGVARHRRRRHYYSCLG*

Sequence

>CNT3015512
AGTCCTAGATAGTCAGCCATTATTGCTGTAATATCCTCTACTTCTGGTAAATCTCAAAACTGTAAACCTAACTACAGTCTTTGTTTTTTTTTATTTTCTG
TACATGATTTGTTGAATAGAGGAACGGAGTTTGCAGAAACATATGTTCATGTGCGCACTGTGCATTGTCCAAAGAAAATGTCAGCTGGCGGCAAACTGGC
TTGAGATTACTCGACGGTGTCGGATTCCTTGCGAAATGCAAAGTATCCGTCAGTCCATCATCCCAGACTTTAAACACGCTTGGCACATGAAATTAACCCA
AAATATCAGTATACCATCCCAGCTGTGTATCACATATCATACGGGGTGCGGCGGCGGCAGGTAGAGAAGCATTGAGGTATAGATAGCTTGATACAAACAA
GTTCATTCCACGTATGACGCGCCGATCGAGAGTATCATTCTTTCGTAGTGTGCTACAACCTTCGTCCTTCATGTCGATGGCCTATATAGCTATACGACTA
GCTAGTTGTCGTAGATGCGGCACTCCTCGGAGTCCGGGTTGTCCTTGCAGTACTTCTCGAGCGGGTCGTTGGCGTTGGTCTCCTTGAGGCTGTCGCGGGC
GTGGCTGGCCGTGGCGCTGAGCTCCTCCACCTCGTCCCACGCCGCCGCGCACTCGGCGTCGCCCTTCTGGTCGTCCGCGCACGTCTCCTCCGCCTGCTTG
ATGCTCTCCGACACCTTGTCGGAGATCTCCGGCGGCGTGGCTCGCCACCGTCGACGCCGCCATTATTATTCCTGTCTTGGCTAGCTTATAGCTTCCTGCG
TCACGGTCACGATCGAACGAACTCGATCTTCTGCGTGTGTGATCGTCGTTCGGTGTGTGC