Detailed information on CNT3015474


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT008675, E-value = 3e-94

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30505987Zea maysNicotiana attenuata41.3972.3486.97238forward
CNT30637620Zea maysCapsicum annuum38.4311.5187.33221forward
CNT30540416Zea maysBrassica napus51.4880.4388.85296forward
CNT30146188Zea maysMedicago truncatula59.343.4485.04341forward
CNT30440878Zea maysAegilops tauschii45.2233.0890.38260forward
CNT30647369Zea maysRosa chinensis4830.4687.32276forward
CNT30721805Zea maysTriticum spelta40.8716.2789.79235forward
CNT30424894Zea maysPapaver somniferum65.0450.2786.1374forward
CNT30644842Zea maysCannabis sativa38.4354.785.97221forward

Expression of CNT3015474

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MMMTWEVKLAASLAGSSLELESLMVHLNGLNLSSKTSRPKSNNHTRLNDTSLNTSNRDSSNTTNLVHILKGETQGLV*

>peptide 2 (29 aa)
SLPDRLSILVTSSANLTAMCEVWQSRTGA*

Sequence

>CNT3015474
GCTCCTTGCCGGATCGCCTATCAATCTTGGTAACGAGCTCAGCAAACTTGACAGCAATGTGTGAGGTGTGGCAGTCCAGAACTGGGGCATAGCCATTGCC
AATCTGGCCAGGGTGGTTCATGATGATGACCTGGGAGGTAAAGCTAGCAGCCTCCTTGGCAGGGTCATCCTTGGAGTTGGAGAGCCTCATGGTGCATCTC
AACGGACTTAACCTCAGTAGTAAGACCAGTAGGCCCAAAAGTAACAACCATACCAGGCTTAATGACACCAGTCTCAACACGTCCAACAGGGACAGTTCCA
ATACCACCAATCTTGTACACATCCTGAAGGGGGAGACGCAGGGGCTTGTCTGAAGGCCTCTTTGGCTCATTGATCAAGTCCAGAGCCTCAAGTAGGGTTG
GGCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCTTCAAAACCAGAGATTGGAACGAAGTGGATCTTATCAGGGTTGTATCCAAC
CTTCTTCAGGTAGGAAGAGACTTCCTTCACAATCTCATCATAACGGGCCTTTGAATACTTGGGCTTCGTTGCATC