« Back to Prunus persica search


Detailed information on CNT30154320


BLAST search results

BLAST vs Swiss-Prot:
sp|P55737|HS902_ARATH, E-value = 1e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695408Prunus persicaOryza sativa53.1248.8882.14196forward
CNT30523621Prunus persicaSetaria italica36.3120.5282.09134forward
CNT30512942Prunus persicaJuglans regia30.6222.2986.73113forward
CNT3019808Prunus persicaCitrullus lanatus32.2517.7684.03119forward
CNT30402735Prunus persicaBeta vulgaris41.1911.1680.92152forward
CNT30526133Prunus persicaPhaseolus vulgaris14.9127.587.2755forward
CNT30631181Prunus persicaVigna unguiculata20.8714.4789.6177forward
CNT30712340Prunus persicaGlycine max38.7524.8788.81143forward
CNT3094731Prunus persicaSolanum tuberosum22.495.5386.7583forward
CNT30566784Prunus persicaActinidia chinensis21.9510.6688.8981forward
CNT30145759Prunus persicaMedicago truncatula20.0519.5390.5474forward
CNT30613762Prunus persicaArabis alpina22.4920.7586.7583forward
CNT30652959Prunus persicaRosa chinensis36.0427.6586.47133forward
CNT30366950Prunus persicaSorghum bicolor24.9310.7586.9692forward
CNT30418103Prunus persicaPapaver somniferum31.4429.7485.34116forward
CNT30704690Prunus persicaPrunus avium59.8910.8897.74221forward
CNT3022206Prunus persicaPopulus trichocarpa24.9316.9188.0492forward
CNT30103468Prunus persicaOryza rufipogon52.336.980.83193forward

Expression of CNT30154320

Peptides detected in this lncRNA

>peptide 1 (60 aa)
CSPKTTHVTLPGSSSFSSPLFLSLHQHPQPFLPLPSFLPHLRHQKSPSQWSSQSRVRLGS*

>peptide 2 (59 aa)
LFTKDHSCDTSWIFFFFFSSFSFSSSTSSTFPSSSFFSSSSSSSEISFSVVFSIQSEIG*

Sequence

>CNT30154320
CTTGTTCACCAAAGACCACTCATGTGACACTTCCTGGATCTTCTTCTTTTTCTTCTCCTCTTTTTCTTTCTCTTCATCAACATCCTCAACCTTTCCTTCC
TCTTCCTTCTTTTCTTCCTCATCTTCGTCATCAGAAATCTCCTTCTCAGTGGTCTTCTCAATCCAGAGTGAGATTGGGTAGCTGATGAACTCAGAGTGCT
TCTTAACCAAATCCTTGAGGTGAAGAGTAATCTTTGTACCCCTGCCGAGAACCTCACCAGAGTTGTCTCTGGTGACTGTGAATGAGCCTCCCGCTTGAGA
CTCCCACACATATTGCTCATCATCATTGTGCTTGGTGGTAACAATGACCTTGTCTGCAACAAGATAAGC