Detailed information on CNT301541


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30448338Zea maysSaccharum spontaneum40.2813.4192.94170forward
CNT30361317Zea maysSorghum bicolor36.7320.2994.19155forward
CNT30101096Zea maysOryza rufipogon34.126.6189.58144forward
CNT30603952Zea maysOryza punctata25.129.7290.57106forward

Expression of CNT301541

Peptides detected in this lncRNA

>peptide 1 (61 aa)
RRPRRSASSCARRAPGRSGTPCGRRSTCGLCSRPPRRRTRRWMTWPARGRPRLAAAAGRRR*

>peptide 2 (42 aa)
DAPVVVLPLVPAERLAGRELLVADGAPVDSARGRPVGGRGGG*

Sequence

>CNT301541
CCGACGCCCCCGTCGTAGTGCTTCCTCTTGTGCCCGCCGAGCGCCTGGCCGGTCGGGAACTCCTTGTGGCAGACGGAGCACCTGTGGACTCTGCTCGAGG
CCGCCCCGTCGGAGGACGCGGCGGTGGATGACGTGGCCGGCTCGCGGCCGACCTCGACTGGCGGCAGCGGCGGGACGACGACGGTGATCGGGGCGGGGGC
CTCCGGGACGGGCACTGCTGCCGAGACAGTTACAGCGGCGGCAGTAGGAGGAGGAGGAGGCAGAGCGCGAGGTTCTCCTCCTCCGATCGCTGGCGGCGCG
AGCGCTTCCTCTTGGCCCACCCCTGGGGCACGTGGGCGCCCTCGTCCCCGCCCGTGGCGGTGGCGCTGCTGCTCGTGGTCGTCGCTGCGGGCGCGACCTC
CTCCTCGCTCTGCTTCTCCGGG