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Detailed information on CNT3015387


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41784|TBB7_MAIZE, E-value = 2e-75

BLAST vs NONCODE:
NONPOPT000063, E-value = 2e-67

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692476Zea maysOryza sativa18.7953.0586.18304forward
CNT30377201Zea maysArabidopsis thaliana20.1556.9986.81326forward
CNT30727252Zea maysCorchorus capsularis22.1347.882.4358forward
CNT30708222Zea maysGlycine max17.1268.7383.03277forward
CNT30559885Zea maysActinidia chinensis16.2550.1986.31263forward
CNT30442409Zea maysAegilops tauschii10.2624.7889.16166forward
CNT30252641Zea maysAvena sativa20.0939.9888.31325forward
CNT30261872Zea maysBrassica rapa19.4135.4881.21314forward
CNT30614070Zea maysArabis alpina21.5725.2586.82349forward
CNT30627268Zea maysDaucus carota21.5728.1982.81349forward
CNT30681848Zea maysTriticum urartu19.7836.1685.31320forward
CNT30722476Zea maysTriticum spelta10.2624.8188.55166forward
CNT30341625Zea maysEragrostis tef22.1336.7287.99358forward
CNT30370114Zea maysOryza glumipatula20.440.2986.06330forward
CNT3024644Zea maysPopulus trichocarpa21.6317.1184350forward
CNT30322043Zea maysAsparagus officinalis20.8940.3883.14338forward
CNT30119164Zea maysCitrus clementina16.0755.7984.23260forward
CNT30575530Zea maysOryza barthii21.1437.8785.96342forward

Expression of CNT3015387

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLHSRQKQMSAMHVMTLPGLQPICLLLTGF*

>peptide 2 (30 aa)
MHLLHKHKKNIFKVFKAKRNECYAYHNTSY*

>peptide 3 (81 aa)
SATRSFMLLSASVNSISSIPSPVYQCKKAFLLNMAVNCSLTRRNISWMEVELPTNVEDIFRPIGGMSHTLDFTLLGIHSTK*

>peptide 4 (58 aa)
MSAMHIKTPPGVTTHMSIINMFFSIMWLIIYMYITDRMEKMCNGNIQDRMYVLEYDSK*

>peptide 5 (75 aa)
MYNKSRMVNVLEIYKIGNVGHTSANVSINMFPHIMNNYFPYAAFQTKTNECYACHDTSWVTTHMFIVNRFLSIIL*

>peptide 6 (50 aa)
LGHQVVHVTLCLGELHLIHTLACVPVQESLPPEHGRELLADAAEHLLDGG*

>peptide 7 (51 aa)
MWRTSSGQLVECHTHSTSRCWGSTPRSRKSSCSARSASVHPLPWCSSSHGT*

>peptide 8 (30 aa)
MVAEIRWLRSPTAHTKKMLTGILMSVQKKC*

>peptide 9 (35 aa)
MYMTNKWEMRTGDIQDRICARLRHHIVNKHISKTE*

Sequence

>CNT3015387
CTCGGCCACCAGGTCGTTCATGTTACTCTCTGCCTCGGTGAACTCCATCTCATCCATACCCTCGCCTGTGTACCAGTGCAAGAAAGCCTTCCTCCTGAAC
ATGGCCGTGAACTGCTCGCTGACGCGGCGGAACATCTCTTGGATGGAGGTTGAGTTGCCAACGAATGTGGAGGACATCTTCAGGCCAATTGGTGGAATGT
CACACACACTCGACTTCACGTTGTTGGGGATCCACTCCACGAAGTAGGAAGAGTTCTTGTTCTGCACGTTCAGCATCTGTTCATCCACTTCCTTGGTGCT
CATCTTCCCACGGAACATAGCAGATGCCGTGAGGTAGCGGCCATGACGAGGGTCAGCAGCACGTAACACCACTCATGGTTGCAGAGATAAGGTGGTTGAG
ATCACCAACTGCACACACAAAAAAAATGTTAACAGGCATCCTTATGTCTGTACAAAAAAAATGTTAACAGGCATATTACTCCAGGCCTTTAATACAAGTA
ATATCAATTAGAACACTGCCAGGTATGAGGCAAAAATATCTGGCCCCTTCAATATTACATACAAATTGAACGGTTTATTAGCTCAATGAACACATGTATA
GCAAATAAACTATGAAACATATGCTGGAAATATACAAGAGTTCAAGACAAGCAGATAATAATGCATTTGCTACATAAGCATAAAAAAAATATATTCAAAG
TGTTCAAGGCAAAAAGAAATGAGTGTTATGCATATCATAACACTTCTTACTGAGTGTTTACAAATTACATGTATAACAAAAGCAGAATGGTAAACGTACT
GGAAATATACAAGATAGGTAATGTTGGCCACACTTCAGCAAATGTATCAATAAACATGTTTCCACACATAATGAACAACTATTTTCCTTATGCTGCATTC
CAGACAAAAACAAATGAGTGCTATGCATGTCATGACACTTCCTGGGTTACAACCCATATGTTTATTGTTAACAGGTTTTTAAGCATCATTTTGTAGCTGA
TCATTTACATGTATATGACAAACAAATGGGAAATGCGTACTGGAGACATACAAGATAGAATATGTGCCAGACTAAGACATCATATAGTCAATAAACATAT
TAGCAAAACAGAGTGAATAACTAGTCTGCTTACGCTGCATTCCAGACAAAAAGAAATGAGTGCTATGCATATCAAAACACCTCCTGGGGTTACAACCCAT
ATGTCTATTATTAACATGTTTTTCAGCATCATGTGGCTGATCATTTACATGTATATAACAGACAGAATGGAAAAAATGTGTAATGGCAACATACAAGATA
GAATGTATGTGCTAGAGTATGACAGCAAATAGTCAATAAACATGTTAGCAAATCACAGTGAACAAACTAGTCTGCTTGTGCTGCATTCCAGACAAAAAGA
AATGAGCGTTTGCATATCATAACGCTTCCGTGAGTTATGACCCACACATAGTTATAACAATAAATAATATTGGCGCAAAGCATAAACAGATAAAACACTG
CATCATCAATTTGCAACATACATGCAAACATGTTATTATACTGTAAACTAGATAATGCCAAATAAATCAACAACAGAAACTGATAGGAATAGGATACAGA
TGCAAAAATGGAAAGCGT