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Detailed information on CNT30151249


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0IQF7|RS16_ORYSJ, E-value = 3e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696918Brachypodium distachyonOryza sativa62.9665.7390.24328forward
CNT30515426Brachypodium distachyonJuglans regia22.849.0684.87119forward
CNT3043803Brachypodium distachyonPrunus dulcis25.7225.5781.34134forward
CNT30295032Brachypodium distachyonTriticum aestivum40.1240.0489.95209forward
CNT30391876Brachypodium distachyonTriticum turgidum42.9910090.62224forward
CNT30568235Brachypodium distachyonActinidia chinensis16.3128.4385.8885forward
CNT30555324Brachypodium distachyonOryza glaberrima6288.0190.4323forward
CNT30438780Brachypodium distachyonAegilops tauschii61.4239.8590.94320forward
CNT30247768Brachypodium distachyonAvena sativa52.7845.2390.55275forward
CNT30663140Brachypodium distachyonTriticum dicoccoides51.4438.8490.3268forward
CNT30472632Brachypodium distachyonSaccharum spontaneum63.726.7992.47332forward
CNT30136796Brachypodium distachyonLolium perenne23.0317.5792.5120forward
CNT30721366Brachypodium distachyonTriticum spelta48.7549.4288.98254forward
CNT30365247Brachypodium distachyonSorghum bicolor49.3337.8593257forward
CNT30120766Brachypodium distachyonCitrus clementina24.5723.6680.47128forward
CNT30104226Brachypodium distachyonOryza rufipogon62.3867.9990.15325forward
CNT30581659Brachypodium distachyonEchinochloa crusgalli20.1516.388.57105forward
CNT30117820Brachypodium distachyonOryza nivara62.9642.0590.24328forward
CNT30176592Brachypodium distachyonVigna angularis26.316.8181.75137forward

Expression of CNT30151249

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MSMSLNRDRPASRIGSKALRRSISGRISSIGAPFTLIRPRPGLQ*

Sequence

>CNT30151249
ATTCAAGGAAACTCAACAGGATAATTAAGTTCTCAACTAGCATCATCATTTAACATAATCTTAACATAACATGGTCCTTCCATCTAGGCAGGAAGCAAAA
GATCACCATCACCCATTTCATTGTTCCAACATAATGCAAAAAACACTAGGCATATAAAAAGCAGTAAAGAGATAGATGAGACAGCCCAAGAGGGTGCGGT
CGTAGCGGCCGAAGATCTCCTTGACCTCCTTCTTGGCGGCCTCGTCGACGTACTTCTGGAAGTAGGCGACGAGCCCCTTGGCGATGGCCTGGCGGATGGC
GTAGATCTGCGACGTCTTCCCGCCGCCGCGGACGCGGATCCGCATGTCGATGTCCTTGAACCGAGACCGGCCGGCCAGCAGGATCGGCTCGAAAGCCTTG
AGGCGGAGCATCTCCGGGCGGATAAGCTCGATCGGGGCGCCGTTCACCTTGATCAGGCCGCGGCCAGGCTTGCAGTAGGCCACGGCGACCGCCGTCTTCT
TCCGCCCGAAGCACTGCACCG