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Detailed information on CNT30151243


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30269412Brachypodium distachyonChenopodium quinoa21.887.4486.43140forward
CNT30556103Brachypodium distachyonOryza glaberrima15.1631.897.9497forward

Expression of CNT30151243

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MDLGLAIELSESKEILEVPGGAAVPVTICHPVDVV

>peptide 2 (65 aa)
LKNIVSKIFLLTLENGKQQIAVKTGYLTRAALLGRESEKYVGGGRISSFFFYVMYLCFYSFFFLN*

>peptide 3 (43 aa)
MTMSSSETACSSWILGWPSNSVRARKSLKCLEVQLCLSPSAIQ*

Sequence

>CNT30151243
CTGAAGAATATAGTCTCCAAAATCTTTCTTCTCACCCTTGAAAATGGCAAGCAGCAGATTGCGGTGAAGACCGGCTATCTCACTAGAGCTGCCTTGCTTG
GGAGAGAGAGTGAAAAATATGTAGGGGGAGGACGAATCTCATCTTTTTTTTTCTATGTTATGTATCTGTGTTTTTATTCTTTTTTCTTTCTTAACTGAAG
GAATTTCCAGGTCTCTTTTTCACTGTGTTACATAAGGTAAGTATTGTATAATAGTTCGGTTTTCCGTGATTTTTTCCATTCGTCTGTGTAAATACCCTAA
TATGGGTTCACAATCAATAACATCTTCACCATCGAGAGTAACGATCAGTCGAAGAACACCATGCTCTTGCTGTATTAGAAATTGAAAGTAAGTCAACTCC
TTCCTCTTAGAGCAACGGAGAATGTCATTGAGAATCTTTACTTCAGGCTTCAACCTAGCCAGTCCTCCAGAGGCACCAGAAAATCCTTCTTCATAGAGAA
TGACAATGTCTTCATCTGAGACAGCCTGTTCTTCATGGATCTTGGGTTGGCCATCGAACTCAGTGAGAGCAAGGAAATCCTTGAAGTGCCTGGAGGTGCA
GCTGTGCCTGTCACCATCTGCCATCCAGTAGATGTTGTAG