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Detailed information on CNT30151238


BLAST search results

BLAST vs Swiss-Prot:
sp|O65349|RBS_CAPAN, E-value = 4e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30180826Brachypodium distachyonSecale cereale37.9727.2384.89311forward
CNT30582550Brachypodium distachyonEchinochloa crusgalli16.2421.3584.96133forward

Expression of CNT30151238

Peptides detected in this lncRNA

>peptide 1 (45 aa)
NSFKLLGIHICKLAPRSRARLLHTTTILGMKNRKLKAMSELTKLS*

>peptide 2 (31 aa)
LFQTFRNSHMQASSSIESQVATHNNNLGDEK*

>peptide 3 (44 aa)
MVHLNTELSLVVYALPDSSQPGGLKAMKLMHCTCRVLSKPMMRT*

>peptide 4 (71 aa)
MQLILPPLLTRPRLLEERRLRGRKPSRWVPWLQAAGRASEKRLLAYWVRGWVSIVGLYNVPKLGSPPSPALS

Sequence

>CNT30151238
AACTCTTTCAAACTTTTAGGAATTCACATATGCAAGCTAGCTCCTCGATCGAGAGCCAGGTTGCTACACACAACAACAATCTTGGGGATGAAAAATAGAA
AACTCAAAGCAATGTCAGAGTTGACAAAACTGAGCTGACACTTTATATATGGTCCATCTTAATACGGAGCTGTCCTTGGTTGTTTATGCCTTGCCGGATT
CCTCGCAGCCCGGTGGCTTGAAGGCGATGAAGCTGATGCACTGCACCTGCCGGGTGTTGTCGAAGCCGATGATGCGGACGTAGGCGTCCGGTACCTCCCG
TCGTAGTACCCAGGAGAGCTGTTGTGCTCACGGAACACAAAGCCGACCTTGCTGAACTCAAGGCAAGGAACCCACTTGGAGCGGATCAGGTACTCGATCT
GCTTCAGGAGAGACTCCACGGAGAGAGGGGGCAGGTACGAGAGGGTCTCGAACTTCTTGATGCCCTCGATCGGCCACACCTACAAATTAATTAAAACACA
TTTGCATTGACATTCATGTACACATTGATTACTGACGATATATGTAATTCTACATCTGCATGTAGTAATTTGGGGTTGTTTAATTAACATATACATACCT
GCATGCAGCTGATCCTTCCGCCGTTGCTGACGCGGCCGAGGCTGTTGGAGGAGCGGCGGCTGAGGGGGAGGAAGCCATCACGGTGGGTGCCATGGTTGCA
AGCAGCAGGTAGAGCAAGCGAGAAGAGGCTGCTAGCTTATTGGGTTCGAGGCTGGGTCAGCATTGTGGGGTTATATAACGTACCCAAGCTTGGCTCTCCA
CCCAGTCCTGCTCTATCCT