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Detailed information on CNT30151232


BLAST search results

BLAST vs Swiss-Prot:
sp|P29766|RL8_SOLLC, E-value = 3e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672556Brachypodium distachyonSetaria viridis18.6568.4893.81226forward
CNT30596728Brachypodium distachyonOryza meridionalis20.0550.192.59243forward
CNT30371441Brachypodium distachyonOryza glumipatula18.4854.992.86224forward
CNT30578506Brachypodium distachyonOryza barthii20.0515.2893.42243forward
CNT30117442Brachypodium distachyonOryza nivara18.454.7992.83223forward

Expression of CNT30151232

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MEFTDTTDFIKNRIIQQLVILIRDRITWFQDHGLQTSISTSISCITKM*

>peptide 2 (33 aa)
MRPTFWPGGASRRTVEALPALSIGFSVLPPPAT*

>peptide 3 (35 aa)
RLPKYRAKTTSIMEYMSLRGNLEASTGANIDKQRR*

Sequence

>CNT30151232
CCAGGTTACCAAAGTACCGAGCAAAAACCACATCCATAATGGAATACATGTCCTTGAGGGGTAATCTAGAGGCGAGCACGGGAGCAAATATAGATAAACA
GCGACGATAACTCTAAGTGGCCTTGTCAGCCTTGGCAGCAGAGGCAGCAGCCTGGCCTCTGAGACGACCAGTCCTCCTGGCAGCAATGAGACCAACCTTC
TGGCCAGGGGGTGCATCACGGCGGACAGTGGAGGCATTACCAGCCTTGAGCATTGGCTTCTCAGTCCTGCCTCCACCAGCAACCTGACCAATCATGGCAC
GGCAGCTGCTTGGGACAATCTTCTTGGCACCAGAGGGGAGCTTGATCCTGCATAAATAGAACATGGGTGAATTCACCTCTACAGAAGACTCAGTCTGAAA
TATATATGTACTACTAAAGAAATCATCAAAAGCATCAGAGGAAAGGACTCACCAGGAAGACAAAATGACATCCTAGTGATGTAGCATGTACAATCAAATT
ATTCTAATAAACTGACTACTTCATGGAATTCACAGACACTACTGATTTCATTAAAAACAGGATCATACAACAACTGGTGATCTTAATTAGAGACAGGATC
ACATGGTTCCAGGATCATGGTTTACAAACATCAATCTCTACGTCAATTTCTTGCATAACTAAGATGTAACCAAAATGCAAAACATGAAAACATCAATTGA
CTATTACATATTACATAATCAAGACTAGAAGAAACATCATGTTTCCAATATGATGTCTTTATAAACTTTAAACAACATTCAACTCTGCTAGATTACAAAA
ATGTCTGGAGCAAGCATACATAGGCAATTCAATATTCAATAATTACAGTATCTAAGGCAGGCATGCCAGAAGCAGTGTGAAGAGACAATACATATCTCAT
TACATACAGTCCCTAGAGGGAGATCATCATTTCCTACCACGAATCACGTCATAGAAAATCTAAGAAGGGTTAAAAGCACGCCAGATCTAACCATATTCAT
ACACCTCATAAACTATTACAATCCACCACTATCTGGCGCATGCGCGTTGAATAGAATAGACAGAAGGGTAGATGATGGCTGAAAGTACCTTGAGGTGCCG
TTGTCAGGGTTGTGGCTGATGACGATGGCGTAGTCCCCGGAGGCCCTGGCGAAGACGCCGCGGTCGCCGACATGGTGCTCGACGTTGCAGATGACGCCTC
CCTCGGGCACGG