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Detailed information on CNT30151138


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43194|NLTP2_SORBI, E-value = 3e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697724Brachypodium distachyonOryza sativa47.9719.2985.21142forward
CNT30676413Brachypodium distachyonSetaria viridis44.9336.0484.21133forward
CNT30524241Brachypodium distachyonSetaria italica45.6140.7984.44135forward
CNT30555885Brachypodium distachyonOryza glaberrima42.9111.6787.4127forward
CNT30471439Brachypodium distachyonSaccharum spontaneum43.2448.1289.84128forward
CNT3068317Brachypodium distachyonLeersia perrieri48.3128.685.31143forward
CNT30367564Brachypodium distachyonSorghum bicolor20.6110.6195.0861forward
CNT30371391Brachypodium distachyonOryza glumipatula38.8527.8589.57115forward
CNT30103942Brachypodium distachyonOryza rufipogon43.5844.0386.05129forward
CNT30578426Brachypodium distachyonOryza barthii38.8532.0389.57115forward
CNT30498573Brachypodium distachyonDigitaria exilis44.5927.6784.09132forward
CNT30117882Brachypodium distachyonOryza nivara47.9732.6485.21142forward

Expression of CNT30151138

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MLTPHLEGMLLALPTSRPFTPRAAVLRQLQAVRLSAVDLAWELSSPWPPPAPRQPP*

>peptide 2 (70 aa)
AVDVGADGVGDVDAALGGDAAGLADVETLHAAGGGLEAVAGGALVGGGPGLGVEFAMATTSTTAATMNIT*

Sequence

>CNT30151138
GCAGTCGATGTTGGGGCTGATGGTGTAGGGGATGTTGACGCCGCACTTGGAGGGGATGCTGCTGGCCTTGCCGACGTCGAGACCCTTCACGCCGCGGGCG
GCGGTCTTGAGGCAGTTGCAGGCGGTGCGCTTGTCGGCGGTGGACCTGGCCTGGGAGTTGAGTTCGCCATGGCCACCACCAGCACCACGGCAGCCACCAT
GAACATCACCTGAGCACGAGCCATCTCAGACTGATTGCTTGCTTGAGCTGAACTGAAGTTCTGAACTGGAGAGTGAAGAAGATGAAGAAGGTTGAG