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Detailed information on CNT30151099


BLAST search results

BLAST vs Swiss-Prot:
sp|Q42064|RL83_ARATH, E-value = 9e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672571Brachypodium distachyonSetaria viridis52.3447.8696.52201forward
CNT30512691Brachypodium distachyonJuglans regia46.3510.9685.96178forward
CNT30592159Brachypodium distachyonMusa acuminata33.3339.5189.84128forward
CNT30555589Brachypodium distachyonOryza glaberrima53.9111.8695.17207forward
CNT30624277Brachypodium distachyonDaucus carota47.6638.4585.79183forward
CNT30367313Brachypodium distachyonSorghum bicolor53.9136.4495.17207forward
CNT30646445Brachypodium distachyonCannabis sativa44.5349.5783.04171forward
CNT3054135Brachypodium distachyonAmborella trichopoda5031.6385.42192forward
CNT30725998Brachypodium distachyonLupinus angustifolius42.1977.1487.04162forward

Expression of CNT30151099

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MTNMLVVTSSVGMLHRVHGHTTHLRPAVPLHAVLVVGITSLEHWLLSPASTSNLTNHGTAAAWDNLL

>peptide 2 (42 aa)
MWNEESRPQLRKLITNMSRLPKYRAKTTSIMEYMSLRGNLEA*

Sequence

>CNT30151099
CCGAGCAACAGAGCCTGATAGAATGACAACACAAAATATCCAAGCATAATCTTCTTTATGTGGAATGAAGAATCCAGACCACAACTGCGAAAACTGATAA
CAAACATGTCCAGGTTACCAAAGTACCGAGCAAAAACCACATCCATAATGGAATACATGTCCTTGAGGGGTAATCTAGAGGCATGACCAATATGCTGGTG
GTTACCTCCTCCGTGGGGATGCTCCACAGGGTTCATGGCCACACCACGCACCTTAGGCCAGCAGTTCCTCTTCACGCGGTACTTGTGGTAGGCATTACCA
GCCTTGAGCATTGGCTTCTCAGTCCTGCCTCCACCAGCAACCTGACCAATCATGGCACGGCAGCTGCTTGGGACAATCTTCTTG