Detailed information on CNT3015104


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690383Zea maysOryza sativa26.0612.8489.5386forward
CNT30672671Zea maysSetaria viridis27.5822.4792.3191forward
CNT30520803Zea maysSetaria italica27.5820.5493.4191forward
CNT30286278Zea maysTriticum aestivum27.2730.8291.1190forward
CNT30383152Zea maysTriticum turgidum27.2714.491.1190forward
CNT30552437Zea maysOryza glaberrima26.0620.3889.5386forward
CNT30655558Zea maysTriticum dicoccoides27.2723.6891.1190forward
CNT30678966Zea maysTriticum urartu27.2717.5491.1190forward
CNT30719808Zea maysTriticum spelta27.2721.1391.1190forward
CNT30595633Zea maysOryza meridionalis26.0626.4689.5386forward
CNT30369401Zea maysOryza glumipatula26.0619.589.5386forward
CNT30148777Zea maysBrachypodium distachyon27.2710.19090forward
CNT3099956Zea maysOryza rufipogon26.068.0289.5386forward
CNT30574749Zea maysOryza barthii26.0622.7589.5386forward
CNT30115687Zea maysOryza nivara26.0619.3789.5386forward

Expression of CNT3015104

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MGGGEAGWLSRHRGWLSCSCSRSSRSWCRSCSRRCTRSCRRSKTCFDESKERKEDGGCLALIALLV

>peptide 2 (39 aa)
NAETHSICILARARGRQPCSDRKEQWRWPVEGSYLDAAT*

>peptide 3 (97 aa)
MYISPGTRQATMQRQEGTMAVAGGGILFRRRYIVVVRWVGGRPGGCLVIAGGSVAAAAGAAAAGAAVAAGGARAVAAAARHALMSRRKERRTVGAWL*

Sequence

>CNT3015104
TAATGCTGAAACACATAGTATATGTATATTAGCCCGGGCACGAGGCAGGCAACCATGCAGCGACAGGAAGGAACAATGGCGGTGGCCGGTGGAGGGATCT
TATTTAGACGCCGCTACATAGTTGTAGTACGATGGGTGGGGGGGAGGCCGGGTGGTTGTCTCGTCATCGCGGGTGGCTCAGTTGCAGCTGCAGCAGGAGC
AGCCGCAGCTGGTGCCGCAGTTGCAGCCGGAGGTGCACGCGCAGTTGCCGCCGCAGCAAGACATGCTTTGATGAGTCGAAGGAAAGAAAGGAGGACGGTG
GGTGCTTGGCTCTGATTGCTTTGCTTGTGA