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Detailed information on CNT30151009


BLAST search results

BLAST vs Swiss-Prot:
sp|P00871|RBS1_WHEAT, E-value = 1e-64

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672589Brachypodium distachyonSetaria viridis60.7438.9282.64311forward
CNT30180337Brachypodium distachyonSecale cereale57.8120.6691.22296forward
CNT30300099Brachypodium distachyonTriticum aestivum66.643.1188.86341forward
CNT30393324Brachypodium distachyonTriticum turgidum66.632.3888.27341forward
CNT30555700Brachypodium distachyonOryza glaberrima62.893586.65322forward
CNT30665882Brachypodium distachyonTriticum dicoccoides66.636.9888.27341forward
CNT30684612Brachypodium distachyonTriticum urartu64.8434.0990.66332forward
CNT30578501Brachypodium distachyonOryza barthii62.8928.786.65322forward

Expression of CNT30151009

Peptides detected in this lncRNA

>peptide 1 (45 aa)
NSFKLLGIHICKLAPRSRARLLHTTTILGMKNRKLKAMSELTKLS*

>peptide 2 (44 aa)
MVHLNTELSLVVYALPDSSQPGGLKAMKLMHCTCRVLSKPMMRT*

>peptide 3 (31 aa)
LFQTFRNSHMQASSSIESQVATHNNNLGDEK*

Sequence

>CNT30151009
AACTCTTTCAAACTTTTAGGAATTCACATATGCAAGCTAGCTCCTCGATCGAGAGCCAGGTTGCTACACACAACAACAATCTTGGGGATGAAAAATAGAA
AACTCAAAGCAATGTCAGAGTTGACAAAACTGAGCTGACACTTTATATATGGTCCATCTTAATACGGAGCTGTCCTTGGTTGTTTATGCCTTGCCGGATT
CCTCGCAGCCCGGTGGCTTGAAGGCGATGAAGCTGATGCACTGCACCTGCCGGGTGTTGTCGAAGCCGATGATGCGGACGTAGGCGTCCGGGTACTCCTT
CTTGACCTCCTCCAGCTCCTTGAGCACCTGCGTGGCGTCGGTGCACCCGAACATGGGCAGCTTCCACATTGTCCAGTACCTCCCGTCGTAGTACCCAGGA
GAGCTGTTGTGCTCACGGAACACAAAGCCGACCTTGCTGAACTCAAGGCAAGGAACCCACTTGGAGCGGATCAGGGTCTCGAACTTCTTGATGCCCTCGA
TCGGCCACACCT