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Detailed information on CNT30150988


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CD17|NU2C2_ORYNI, E-value = 7e-63

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690671Brachypodium distachyonOryza sativa25.223.8597.5440forward
CNT30281672Brachypodium distachyonChenopodium quinoa13.75101.2790240reverse complement
CNT3021542Brachypodium distachyonCitrullus lanatus10.0829.5394.32176forward
CNT30488794Brachypodium distachyonOlea europaea7.5660.8396.21132forward
CNT30223508Brachypodium distachyonHordeum vulgare20.8560.8798.63364reverse complement
CNT30234846Brachypodium distachyonBrassica oleracea2.9221.2594.1251forward
CNT30553994Brachypodium distachyonOryza glaberrima39.9898.1797.99698forward
CNT3059312Brachypodium distachyonArabidopsis lyrata15.8150.3689.86276forward
CNT3017926Brachypodium distachyonZea mays9.8545.0398.84172forward
CNT30229065Brachypodium distachyonAnanas comosus21.59103.0190.98377forward
CNT30627892Brachypodium distachyonDaucus carota34.94100.1687.7610forward
CNT30687250Brachypodium distachyonTriticum urartu16.6133.1198.97290forward
CNT30153321Brachypodium distachyonPrunus persica28.64103.0990.8500reverse complement
CNT30425623Brachypodium distachyonPapaver somniferum12.1446.4993.87212forward
CNT3025558Brachypodium distachyonPopulus trichocarpa48.17103.8389.54841forward
CNT30577653Brachypodium distachyonOryza barthii27.4379.0497.29479reverse complement
CNT30603929Brachypodium distachyonOryza punctata9.6242.1197.62168reverse complement
CNT30111895Brachypodium distachyonFicus carica4.4121.6389.6177forward
CNT30726938Brachypodium distachyonLupinus angustifolius10.4288.3582.42182reverse complement

Expression of CNT30150988

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MEDKQMKCFHKNSRRIENEVFILYMPDHELVTASNLRKVPIVSIFGMAYLRNPHE*

>peptide 2 (57 aa)
MHVYGVLQNPNTSEIDIEVGMNLSNEPHSFVDVRSPLMKRGWGKLEPKSYSDGYKRN*

>peptide 3 (39 aa)
MDPCVYIPRFCSWTNENVQELYLPLPFYESLPFCVWHPHS

>peptide 4 (39 aa)
MIFVFSFFSFLFVSRKISSNSPSIDSFPIEMYGSMCLHT*

>peptide 5 (38 aa)
NYSNNYISNLPYGRICKHTFHACLSNSKEIPQNHAKNS*

>peptide 6 (33 aa)
MTGVGELESKRGFLASFSHAKPCMRLSSRTAPK*

>peptide 7 (39 aa)
MRTHYVASTSIIQALYTSLVRFFVGTTHNNELAKWICLS*

Sequence

>CNT30150988
AATTATTCCAATAATTACATATCCAATTTGCCCTATGGACGAATATGCAAGCATACGTTTCATGCTTGTTTGAGTAATAGCAAGGAGATTCCCCAAAATC
ATGCTAAGAATAGCTAGGATTTCCAGAAGAAGATGCCATTCGTTTGATGAGAAATAAAAAGGAATATCGAAAATTCGCGTGGCTAAAGCTGAAGCAACTA
CTTTCGAAGTAACAGAAAGAAAAGCAATGACTGGAGTGGGGGAGTTAGAGTCGAAAAGAGGATTCCTCGCTTCTTTCTCTCATGCAAAACCGTGCATGAG
ACTTTCATCTCGCACGGCTCCTAAGTGATAAAAGAAAGAAGAACTCGTCTTCTTTCTTTTTTGATTACCTTCCTCGCGTATGTATAAGACCAAATCCATT
CTTTTTCGAAATTGATTTCGAAAAAAAACTACTAATCCTTAACTTTTCGAGGAATCCTTCATCAGTGGTTGTGAATGACTGACTTTTTCAATCCTTTCGA
CCTTGGTTCCGTAGGAGCAAGTCAGAAAGGTTGAGAAATAGAACCATCTGATTTGATTCGTTCCCAATAGCCATGAGATGATCATCTTAGGGCGATCCTT
TTGTCAACGGATGCTCCTATTACACTCGTAGTCTCTGAAGGATGAGAACCCACTATGTAGCATCTACATCGATAATTCAAGCATTGTATACGTCATTAGT
CCGATTCTTTGTAGGAACTACCCATAATAACGAACTTGCAAAATGGATCTGTTTATCATAAAGAGATTCTTTGTTCCTGACCCTGCTTCACCTTAATTGT
TATTTGAACAAAAAGATCACAATAAACTTTTGGTAAAAGTTCTGTCTTGGCCGGAGTGGGGATAGCATTTCTCTTATGCATGTCTATGGAGTTTTGCAAA
ACCCAAACACCTCGGAGATAGATATAGAGGTAGGAATGAATTTGTCAAACGAACCACACTCCTTCGTAGACGTCAGGAGTCCATTGATGAAAAGGGGCTG
GGGAAAGCTTGAACCCAAGTCCTACAGTGATGGATATAAGCGCAATTGAAATTCCTGGGGAGTTATACATTTGTGTATTGATAAGACCGTTCACAATTTC
TTGAAGCTCGATCTCCCCCCCAGATGAACCATATAGCCAAGAGAAACCATGAACCAGAATAGAAGAGCTTGCCCCACCCATGAGTAAATATTTCATAGTA
GCCTCATTAGACCGTAGATCTCTCTTGGTATATCCAGACAATAGGTAGGAACATAAACTGATACATTCTGGGAAAATGAAACTTCCATGGAAGACAAGCA
AATGAAGTGCTTTCATAAAAATTCTCGTAGAATCGAGAATGAAGTTTTCATTCTGTACATGCCAGATCATGAATTAGTAACTGCATCCAATCTCCGAAAA
GTCCCGATTGTTTCTATTTTTGGAATGGCATATTTACGGAATCCCCATGAATAGGATCAAACCTTATTCCATTTCCATAAGATTCTTCTTTCTTATTCTT
AAGCAAGCCCTCGAGAGGGCTTAGTTGATCATGATTTTTGTTTTCTCTTTCTTTTCCTTTTTGTTTGTTTCGAGAAAGATATCGTCCAATTCTCCTTCTA
TTGATTCTTTTCCGATCGAGATGTATGGATCCATGTGTCTACATACCTAGATTCTGTTCATGGACTAACGAAAATGTGCAAGAGCTCTATTTGCCTCTGC
CATTCTATGAGTCGCTTCCTTTTTGCGTATGGCACCCCCACTCCCT