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Detailed information on CNT30150971


BLAST search results

BLAST vs Swiss-Prot:
sp|P26667|RBS2_WHEAT, E-value = 4e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30680387Brachypodium distachyonTriticum urartu31.9284.3683.77302forward
CNT30556876Brachypodium distachyonPanicum hallii29.1896.8482.25276forward

Expression of CNT30150971

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MYNYLVTEGVFVSTLSNKYSMQIYRYRCW*

>peptide 2 (38 aa)
DRLYNITCICVYMCSQGSNVHMLLEPMSVHSNVHTRYP*

>peptide 3 (35 aa)
MLVKLSFHKFGQASLTQDEARMRYNLEPNKYTRYYS

>peptide 4 (67 aa)
MVDETGLASYTYIYGTPTDQSRSVSCCLGLAGLLAAWRLEGDEADALHLPGVVEADDADIGVRYLPS*

>peptide 5 (43 aa)
TDCIILHVYVCICVVRVQMYICSSSPCRYIQMYTHDIHRDKEK*

Sequence

>CNT30150971
GACAGATTGTATAATATTACATGTATATGTGTGTATATGTGTAGTCAGGGTTCAAATGTACATATGCTCCTCGAGCCCATGTCGGTACATTCAAATGTAC
ACACACGATATCCATAGGGACAAAGAGAAATAACAAACCGGAAAGGAAAAACGCAAAGCAAAATGCCATGGTTGACGAAACCGGGCTGGCATCTTATACA
TATATATATGGGACTCCAACAGATCAATCCAGATCAGTGAGCTGCTGTTTAGGCCTTGCCGGACTCCTCGCAGCCTGGAGGCTTGAAGGCGATGAAGCTG
ATGCACTGCACCTGCCGGGTGTTGTCGAAGCCGATGATGCGGACATAGGCGTCCGGTACCTGCCATCATAGTACCCAGGGGAGCTGTTGTGCTCGCGGAA
GACGAAGCCGACCTTGCTGAACTCCAGGCAAGGAACCCACTTGGAGCGGATCAGGTACTCGATCTGCTTCAGGAGAGACTCCACGGAGAGAGGGGGCAGG
TACGAGAGGGTCTCGAACTTCTTGATGCCCTCGATCGGCCACACCTACACATTTTCCATTGACATCAGTACATTAATTTTGCTGTATTAGTTTCCAGCTC
TACACAATACTAGCCATCCGGCAACAGGAAATATTACAATCAGTGATACTATTTGTTGTATTAATTTCCAGCATGTAACATCATTACATATATTTTTTCT
TATAAATTAAGTTGATCAAATTTAGAAAAATTGACTTAAGAGTTAAGACAAACCTAAATGTACAACTATTTAGTTACAGAGGGAGTATTTGTATCTACAT
TATCAAATAAGTATAGTATGCAGATATATAGATACAGATGTTGGTGAAATTAAGTTTCCATAAATTTGGTCAGGCAAGTTTGACGCAAGACGAAGCTAGA
ATGCGTTATAATTTGGAACCAAATAAGTACACAAGGTACTACAGCC