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Detailed information on CNT30150944


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40004|RBS_HORVU, E-value = 5e-85

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672909Brachypodium distachyonSetaria viridis52.149.2282.18348forward
CNT30521106Brachypodium distachyonSetaria italica52.14882.18348forward
CNT30180865Brachypodium distachyonSecale cereale55.2452.1989.16369forward
CNT30290030Brachypodium distachyonTriticum aestivum55.0973.0289.13368forward
CNT30221752Brachypodium distachyonHordeum vulgare55.0955.0189.4368forward
CNT30387208Brachypodium distachyonTriticum turgidum55.0934.7288.59368forward
CNT30555612Brachypodium distachyonOryza glaberrima52.433.4988.57350forward
CNT30436411Brachypodium distachyonAegilops tauschii55.0955.8489.67368forward
CNT30257557Brachypodium distachyonAvena sativa54.3447.8390.36363forward
CNT30658347Brachypodium distachyonTriticum dicoccoides55.0968.1589.13368forward
CNT30681645Brachypodium distachyonTriticum urartu55.0925.1589.4368forward
CNT30721860Brachypodium distachyonTriticum spelta55.2464.2988.89369forward
CNT30351769Brachypodium distachyonEragrostis tef42.9633.8885.02287forward
CNT30597241Brachypodium distachyonOryza meridionalis44.3133.9887.16296forward
CNT30371468Brachypodium distachyonOryza glumipatula36.6821.2987.76245forward
CNT30104669Brachypodium distachyonOryza rufipogon52.442.2288350forward
CNT30578612Brachypodium distachyonOryza barthii44.3126.1788.85296forward
CNT30118025Brachypodium distachyonOryza nivara44.3125.5889.19296forward
CNT30556975Brachypodium distachyonPanicum hallii51.3542.9383.38343forward
CNT30551876Brachypodium distachyonOryza brachyantha51.3539.8888.63343forward

Expression of CNT30150944

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MPAVDLRPWKGATEVAEEAITVGAMVASSR*

>peptide 2 (44 aa)
MVHLNTELSLVVYALPDSSQPGGLKAMKLMHCTCRVLSKPMMRT*

Sequence

>CNT30150944
ACAATCTTGGGGATGAAAAATAGAAAACTCAAAGCAATGTCAGAGTTGACAAAACTGAGCTGACACTTTATATATGGTCCATCTTAATACGGAGCTGTCC
TTGGTTGTTTATGCCTTGCCGGATTCCTCGCAGCCCGGTGGCTTGAAGGCGATGAAGCTGATGCACTGCACCTGCCGGGTGTTGTCGAAGCCGATGATGC
GGACGTAGGCGTCCGGGTACTCCTTCTTGACCTCCTCCAGCTCCTTGAGCACCTGCGTGGCGTCGGTGCACCCGAACATGGGCAGCTTCCACATTGTCCA
GTACCTCCCGTCGTAGTACCCAGGAGAGCTGTTGTGCTCACGGAACACAAAGCCGACCTTGCTGAACTCAAGGCAAGGAACCCACTTGGAGCGGATCAGG
TACTCGATCTGCTTCAGGAGAGACTCCACGGAGAGAGGGGGCAGGTACGAGAGGGTCTCGAACTTCTTGATGCCGGCGGTGGACTTGAGGCCCTGGAAAG
GGGCCACGGAGGTGGCGGAGGAAGCCATCACGGTGGGTGCCATGGTTGCAAGCAGCAGGTAGAGCAAGCGAGAAGAGGCTGCTAGCTTATTGGGTTCGAG
GCTGGGTCAGCATTGTGGGGTTATATAACGTACCCAAGCTTGGCTCTCCACCCAGTCCTGCTCTATCC