Detailed information on CNT30150913


BLAST search results

BLAST vs Swiss-Prot:
sp|P51076|CHSY_FRAAN, E-value = 1e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524257Brachypodium distachyonSetaria italica36.0839.6688.57140forward
CNT30180353Brachypodium distachyonSecale cereale21.6520.9586.984forward
CNT30470073Brachypodium distachyonSaccharum spontaneum20.629.3693.7580forward
CNT30119447Brachypodium distachyonCitrus clementina23.211.6686.6790forward

Expression of CNT30150913

Peptides detected in this lncRNA

>peptide 1 (34 aa)
NNKTEYILYQHVQTHVGYYNDTNLIDFTSSLQHQ*

>peptide 2 (70 aa)
MLRCGSAGGDGDAVEHDRLDGEPRAEAEEHAPVHPFARGAGHVAVLGQHVPRCPHPLLVQVNLGLHHVQDG

>peptide 3 (61 aa)
MGTLWSTTVSTVSPGPKPKSTPQSIPSPVALDMLPYSDSTCLVALIRSLFKLILASTMSRMA

Sequence

>CNT30150913
AAAACAACAAAACGGAATATATCCTCTACCAACACGTACAAACCCACGTAGGATACTATAACGATACAAATTTAATCGACTTCACCAGCAGCTTGCAACA
CCAGTAGTAGTGTAGGATAGTTATTGTCGTACGTGACGGATGACAAACGGCCGGACGAATTTGAGGAACCGATATGTTACGCTGTGGCAGCGCCGGCGGT
GATGGGGACGCTGTGGAGCACGACCGTCTCGACGGTGAGCCCCGGGCCGAAGCCGAAGAGCACGCCCCAGTCCATCCCTTCGCCCGTGGCGCTGGACATG
TTGCCGTACTCGGACAGCACGTGCCTCGTTGCCCTCATCCGCTCCTTGTTCAAGTTAATCTTGGCCTCCACCATGTCCAGGATGGCCG