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Detailed information on CNT30150882


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676951Brachypodium distachyonSetaria viridis25.8420.2995.2985forward
CNT30297104Brachypodium distachyonTriticum aestivum34.955389.57115forward
CNT30223766Brachypodium distachyonHordeum vulgare65.0544.1285.05214forward
CNT30137065Brachypodium distachyonLolium perenne66.8748.1483.18220forward
CNT30721254Brachypodium distachyonTriticum spelta31.3118.4989.32103forward
CNT30558778Brachypodium distachyonPanicum hallii25.8421.5295.2985forward

Expression of CNT30150882

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MTVSRVLPSRRRAPVCICVCSWHREFKLQSSESESECVNTDEQLP*

>peptide 2 (36 aa)
FLLPLIIYTYGTFGLSYTFPVKLTQHIMLHCTHACS*

>peptide 3 (84 aa)
VSSALDNLHVRYIRTLVHFPGKINTAHHAALHARMQLIIDKSTAIAMKSSQAGRPLGSSGDDGEQGVAVQEKSAGLHMCLFMAP*

Sequence

>CNT30150882
GTTTCTTCTGCCCTTGATAATTTACACGTACGGTACATTCGGACTCTCGTACACTTTCCCGGTAAAATTAACACAGCACATCATGCTGCATTGCACGCAC
GCATGCAGCTGATCATCGACAAGTCGACGGCAATTGCGATGAAGAGCTCACAGGCTGGGCGTCCTCTCGGCAGCTCCGGAGATGACGGTGAGCAGGGTGT
TGCCGTCCAGGAGAAGAGCGCCGGTCTGCATATGTGTTTGTTCATGGCACCGTGAGTTTAAACTTCAGAGTTCTGAATCTGAATCTGAATGTGTGAATAC
TGATGAGCAATTACCTTGAACCAGACGGC