« Back to Brachypodium distachyon search


Detailed information on CNT30150857


BLAST search results

BLAST vs Swiss-Prot:
sp|P00871|RBS1_WHEAT, E-value = 2e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555748Brachypodium distachyonOryza glaberrima18.5337.6589.5896forward
CNT30597223Brachypodium distachyonOryza meridionalis14.8625.6794.8177forward
CNT30104556Brachypodium distachyonOryza rufipogon14.8628.2194.8177forward

Expression of CNT30150857

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MVDETGLASYTYIYGTPTDQSRSVSCCLGLAGLLAAWRLEGDEADALHLPGVVEADDADIGCWRSGGWRRGGRRWT*

>peptide 2 (38 aa)
LHVYVCICVVRVQMYICSSSPCRYIQMYTHDIHRDKEK*

>peptide 3 (33 aa)
ITCICVYMCSQGSNVHMLLEPMSVHSNVHTRYP*

Sequence

>CNT30150857
ATTACATGTATATGTGTGTATATGTGTAGTCAGGGTTCAAATGTACATATGCTCCTCGAGCCCATGTCGGTACATTCAAATGTACACACACGATATCCAT
AGGGACAAAGAGAAATAACAAACCGGAAAGGAAAAACGCAAAGCAAAATGCCATGGTTGACGAAACCGGGCTGGCATCTTATACATATATATATGGGACT
CCAACAGATCAATCCAGATCAGTGAGCTGCTGTTTAGGCCTTGCCGGACTCCTCGCAGCCTGGAGGCTTGAAGGCGATGAAGCTGATGCACTGCACCTGC
CGGGTGTTGTCGAAGCCGATGATGCGGACATAGGCTGTTGGAGGAGCGGCGGCTGGCGACGGGGAGGCCGGCGGTGGACTTGAGCCCCTGGAAAGGAGCC
ACGGAGGTGGCGGAGGAAGCCATCACGGTGGGTGCCATGGCTGCGCGCGCACGTCTGTATAGTGTGGTACGCTTAGCAAGAGGCTTTGGCTTGAGGCACG
CACTGCGGTGTTGCTAGC