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Detailed information on CNT30150825


BLAST search results

BLAST vs Swiss-Prot:
sp|Q42064|RL83_ARATH, E-value = 1e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30616186Brachypodium distachyonSesamum indicum9.6324.6889.4757forward
CNT30186990Brachypodium distachyonSecale cereale41.7266.5889.88247forward
CNT30393881Brachypodium distachyonTriticum turgidum47.9770.4789.79284forward
CNT30587002Brachypodium distachyonMusa acuminata28.2161.8591.62167forward
CNT30511330Brachypodium distachyonSolanum lycopersicum32.647.384.46193forward
CNT30440426Brachypodium distachyonAegilops tauschii54.7369.0890.74324forward
CNT30652852Brachypodium distachyonRosa chinensis30.9145.9888.52183forward
CNT30721746Brachypodium distachyonTriticum spelta65.5424.1391.75388forward
CNT30338628Brachypodium distachyonEragrostis tef14.5324.2394.1986forward
CNT3024196Brachypodium distachyonPopulus trichocarpa32.4342.2986.98192forward
CNT30322486Brachypodium distachyonAsparagus officinalis32.4340.9488.02192forward
CNT30104395Brachypodium distachyonOryza rufipogon34.1240.8993.07202forward
CNT30117466Brachypodium distachyonOryza nivara29.3915.5890.23174forward

Expression of CNT30150825

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MATPRTLGPGEDAAVADMVLDVADDASLGHGAEREDVADGERGAASAVDELAGVHALRGDEELLL

>peptide 2 (41 aa)
MTNMLVVTSSVGMLHRVHGHTTHLRPWRRRRGRRHGARRCR*

>peptide 3 (53 aa)
MWNEESRPQLRKLITNMSRLPKYRAKTTSIMEYMSLRGNLEASTGANIDKQRR*

Sequence

>CNT30150825
CCGAGCAACAGAGCCTGATAGAATGACAACACAAAATATCCAAGCATAATCTTCTTTATGTGGAATGAAGAATCCAGACCACAACTGCGAAAACTGATAA
CAAACATGTCCAGGTTACCAAAGTACCGAGCAAAAACCACATCCATAATGGAATACATGTCCTTGAGGGGTAATCTAGAGGCGAGCACGGGAGCAAATAT
AGATAAACAGCGACGATAACTCTAAGTGGCCTTGTCAGCCTTGGCAGCAGAGGCAGCAGCCTGGCCTCTGAGACGACCAGTCCTCCTGGCAGCAATGAGA
CCAACCTTCTGGCCAGGGGGTGCATCACGGCGGACAGTGGAGGCATGACCAATATGCTGGTGGTTACCTCCTCCGTGGGGATGCTCCACAGGGTTCATGG
CCACACCACGCACCTTAGGCCCTGGCGAAGACGCCGCGGTCGCCGACATGGTGCTCGACGTTGCAGATGACGCCTCCCTCGGGCACGGAGCGGAGCGGGA
GGACGTTGCCGACGGAGAGCGTGGCGCGGCGTCCGCAGTAGACGAACTGGCCGGTGTACATGCCCTCCGCGGCGACGAAGAGCTCCTTCTGG