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Detailed information on CNT30150789


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692814Brachypodium distachyonOryza sativa31.3673.7998.07259reverse complement
CNT30677945Brachypodium distachyonSetaria viridis31.3617.197.3259forward
CNT3021516Brachypodium distachyonCitrullus lanatus32.214.4688.72266forward
CNT30730658Brachypodium distachyonCorchorus capsularis28.5730.0689.83236forward
CNT30502643Brachypodium distachyonNicotiana attenuata22.414.2986.49185forward
CNT30191576Brachypodium distachyonSecale cereale31.3666.0798.46259reverse complement
CNT30297822Brachypodium distachyonTriticum aestivum31.3662.8698.46259reverse complement
CNT30543269Brachypodium distachyonBrassica napus27.487.6787.22227forward
CNT3082974Brachypodium distachyonBrassica juncea26.1525.4185.65216reverse complement
CNT3017923Brachypodium distachyonZea mays21.1962.598.29175forward
CNT30610477Brachypodium distachyonGossypium raimondii28.5734.8188.56236forward
CNT30232463Brachypodium distachyonAnanas comosus8.4729.6698.5770reverse complement
CNT30684722Brachypodium distachyonTriticum urartu31.3624.2798.46259forward
CNT30364733Brachypodium distachyonSorghum bicolor18.462.396.71152reverse complement
CNT30356763Brachypodium distachyonLactuca sativa26.5140.4188.58219reverse complement
CNT3056176Brachypodium distachyonAmborella trichopoda23.124.1180.1191forward
CNT30319059Brachypodium distachyonAsparagus officinalis26.6327.0691.36220forward
CNT30604848Brachypodium distachyonOryza punctata19.6149.5496.91162forward
CNT30550344Brachypodium distachyonOryza brachyantha27.3696.1796.02226reverse complement

Expression of CNT30150789

Peptides detected in this lncRNA

>peptide 1 (94 aa)
GKGFKGEDCSFTKHMRIKSRLIIRRNLSRYQSPCPSFFENQKDPFRVSVSSFGIWALLSSTYFFLLYSLFIPFQFLLETSQEKSRIGSKIDGLM*

>peptide 2 (33 aa)
MTYVVLKGYLYDPLDCIRPPVAIERGKYTEKNC*

>peptide 3 (30 aa)
MKKRKLEKDPSDSQRMRGKGIDTEKDFFLL*

Sequence

>CNT30150789
GGTAAGGGCTTTAAAGGAGAAGATTGTTCTTTTACCAAACATATGCGGATCAAATCACGTCTTATAATAAGAAGAAATCTTTCTCGGTATCAATCCCCTT
GCCCCTCATTCTTTGAGAATCAGAAGGATCCTTTTCGAGTTTCCGTTTCTTCATTTGGAATCTGGGCTCTTCTATCTTCGACTTATTTTTTTTTGCTTTA
TTCTTTATTTATTCCATTCCAATTTCTTCTCGAAACTTCCCAAGAAAAATCCCGAATTGGATCCAAAATTGACGGGTTAATGTGAGCTTATCCATGCAGT
TAGGCACTCTTCAAATAGGAATCCATTTTCTAACTGGCTTTCGTGCTTTGGTGAGTCGTCCGAGATCTTTTCGATGACCTATGTTGTGTTGAAGGGATAT
CTATATGATCCGCTCGATTGCATAAGACCCCCGGTAGCAATAGAACGGGGAAAGTATACAGAAAAGAACTGTTAGAAAATGGATTCCTATTTGAAGAGTG
CCTAACCGCATGGATAAGCTCACATTAACCCGTCAATTTTGGATCCAATTCGGGATTTTTCTTGGGAAGTTTCGAGAAGAAATTGGAATGGAATAAATAA
AGAATAAAGCAAAAAAAAATAAGTCGAAGATAGAAGAGCCCAGATTCCAAATGAAGAAACGGAAACTCGAAAAGGATCCTTCTGATTCTCAAAGAATGAG
GGGCAAGGGGATTGATACCGAGAAAGATTTCTTCTTATTATAAGACGTGATTTGATCCGCATATGTTTGGTAAAAGAACAATCTTCTCCTTTAATCATAA
TACGGTGTCTCATTTATTCAAATATA