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Detailed information on CNT30150636


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30202287Brachypodium distachyonPisum sativum74.5620.5186.47170forward
CNT30541456Brachypodium distachyonBrassica napus74.5619.1284.71170forward
CNT3082978Brachypodium distachyonBrassica juncea74.562.0984.71170forward
CNT3057109Brachypodium distachyonAmborella trichopoda28.952.9486.3666forward
CNT30116701Brachypodium distachyonOryza nivara89.0491.4494.58203forward

Expression of CNT30150636

Peptides detected in this lncRNA

>peptide 1 (34 aa)
YYCNLLFDLDSFRNYYIYLHKYLEGFQSLIHKAR*

>peptide 2 (29 aa)
IIIVIYFLIWIVSATIISICTNTSRVSNR*

>peptide 3 (29 aa)
MSWVGTQIGSPIAGDKRFICENISKRVSA*

Sequence

>CNT30150636
ATTATTATTGTAATTTACTTTTTGATTTGGATAGTTTCCGCAACTATTATATCTATTTGCACAAATACCTCGAGGGTTTCCAATCGTTAATACATAAAGC
CCGATAAGCATGTCTTGGGTTGGTACGCAAATAGGATCCCCAATAGCGGGAGATAAGAGATTCATATGCGAAAACATAAGTAAACGAGTTTCCGCCTGAG
CTTCCAAGGATAAAGCTTAATTACAATA