Detailed information on CNT30150580


BLAST search results

BLAST vs Swiss-Prot:
sp|A5H452|PER70_MAIZE, E-value = 1e-64

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673938Brachypodium distachyonSetaria viridis15.6947.0884.07113forward
CNT30183751Brachypodium distachyonSecale cereale29.312482.46211forward
CNT30552770Brachypodium distachyonOryza glaberrima10.4222.8785.3375forward
CNT30688208Brachypodium distachyonTriticum urartu10.9720.6886.0879forward
CNT30341029Brachypodium distachyonEragrostis tef28.6140.6384.95206forward

Expression of CNT30150580

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MAAAKSELKSAGLALYCLTSASWEAPLKSSWSECRSPRLTSRLPSPFGAAAGQLRFRSVANAGSMFVSL*

>peptide 2 (44 aa)
GTKVSYNLEAGLLTFEPQELFEPTVHLLFFPSTHASCLHGWVPL*

>peptide 3 (33 aa)
MSITTYRTYLYACSRCTLSTVKFIMRRRRLISC*

>peptide 4 (72 aa)
AQRYLTTWKQGYSLLNPRNYLNQPYISYFFHPRMQAACMVGFLCSQPNYTHACPSPHIVLTCTHAHVAHLAL*

>peptide 5 (60 aa)
MWPRKFWHCEKPMVCAPESAVMSRALRFFLANAAMRALRLDVGAGRSELASAKLAVVESRR

Sequence

>CNT30150580
GGCACAAAGGTATCTTACAACCTGGAAGCAGGGTTACTCACTTTTGAACCCCAGGAATTATTTGAACCAACCGTACATCTCTTATTTTTTCCATCCACGC
ATGCAAGCTGCTTGCATGGTTGGGTTCCTTTGTAGCCAACCAAACTATACACATGCATGTCCATCACCACATATCGTACTTACTTGTACGCATGCTCACG
TTGCACACTTAGCACTGTGAAGTTTATAATGAGACGACGACGATTGATCAGCTGTTGACGACCTTGCAGTTGCGCCTGATCTGTCCGGCCGTCCCGGTGA
GCGGCCTGAATTTCCCCATCTGTATCATGGCCGCGGCGAAGTCGGAGTTGAAGAGCGCCGGGTTGGCGCTGTACTGCCTGACGAGCGCGTCCTGGGAGGC
GCCGTTGAAGAGTTCCTGGTCCGAGTGCAGGAGCCCGCGCCTGACGAGCAGGTTGCCGTCGCCGTTTGGCGCCGCGGCGGGGCAGCTGCGCTTCCGGAGC
GTGGCGAACGCCGGGTCGATGTTTGTGTCGTTGTAGATGTGGCCGCGGAAGTTCTGGCACTGCGAGAAGCCGATGGTGTGCGCGCCCGAGAGCGCCGTCA
TGTCCCGCGCGCTCAGGTTCTTCTTGGCGAACGCCGCGATGAGAGCGTTGAGGCTCGATGTCGGCGCCGGGAGGTCCGAGTTGGCCTCGGCGAAGCTCGC
CGTCGTTGAGTCGCGCCGGC