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Detailed information on CNT30150293


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6EW69|PSAI_NYMAL, E-value = 1e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696190Brachypodium distachyonOryza sativa11.0445.8189.78186reverse complement
CNT30396291Brachypodium distachyonTriticum turgidum11.0448.3190.86186forward
CNT30227829Brachypodium distachyonAnanas comosus7.1825.7488.43121reverse complement
CNT30721105Brachypodium distachyonTriticum spelta5.3442.6510090reverse complement
CNT30596981Brachypodium distachyonOryza meridionalis9.8553.3889.16166forward
CNT30369217Brachypodium distachyonOryza glumipatula8.9623.3495.36151reverse complement
CNT30434598Brachypodium distachyonPapaver somniferum5.2224.7986.3688reverse complement
CNT30585629Brachypodium distachyonEchinochloa crusgalli8.7233.7286.39147reverse complement

Expression of CNT30150293

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSKGSMDGDTKKFFAKWYRELIQYIWNHE*

>peptide 2 (31 aa)
MNCCNGSFYFLFFYIVEYNGSFLQYKSFLQE*

>peptide 3 (64 aa)
MIPLSLLFCYMAYWLCRRAEIQAIADDITSKYVPVRPSKKTYACVRKRNGFRSLSGKFRPARKA*

>peptide 4 (44 aa)
MFLSAPARKRMRVYGSATAFAPCRVSSDPHERRNDLGTVSERGS*

>peptide 5 (39 aa)
MTDLNLPSIFVPLVGLVFPAIAMVLYFFMCRKIRLSSIF*

>peptide 6 (34 aa)
MWLFLHTNEKRSIFIRLNLFFRKKKIEPSLIAVN*

Sequence

>CNT30150293
TCCGTTTTTCTTCTAGACGAATACGATATTGCGATCTTTTCTCAGAAGGCAGAAGATACTTCAGGATCTAGGTCTTTTACTAGTTAGTCCTGGTAAAGCT
CCCAGACGGCATATTTTTGCGAAACGAGGTCCTCAGTAACGAGACATAAAGACTCCTTTTTTCTTTTTACACACAAAATCCAAATGAAAACAGCACTAAA
GGATAAACAAAGCCAAATCTACTGAAGTACTAAAAAAACGATAGAACCTATGACTCCATAGGATTTTATTGCAAAGAATCCAAAAACCTCATTGGACGGG
ATGGCGGAACAAACCCCAAAAATTGTCTTATTTGGTAAGGTTATAAATTACCAAATAAGACAGGAATAGAGTAAATATTCGCCCGCGAAATCCTTATTGA
ATTAGAATACTCTACCGCAATTCAATAATTCAATAAATTCAATAAAAGATATATGGAATATATGACAAAGGTGGAGTCTTGGAGTATTTCGATCGATCGG
TCATATAGGCCTGAGTCAGACATCAAATAGCTTCGATAGATAGAAATAGTTAATTTGAATTGAGACACCTATTCTATGACGGATTTAAACTTACCTTCGA
TTTTCGTGCCTTTAGTAGGCTTAGTATTTCCGGCAATTGCAATGGTTCTTTATTTCTTTATGTGCAGAAAAATAAGATTGTCTAGTATTTTTTAGTGTAA
GTAAGTGTAAGTAATAGAATATGGTAGGGTATGTGGCTCTTTCTACACACAAATGAAAAACGATCCATTTTTATTCGGCTCAATCTTTTTTTTAGAAAAA
AAAAGATTGAGCCGAGTTTAATTGCAGTCAATTAGAAGAATAAAGAAGAATTACTGCATTTCATAACTTATTTTTTCTCTTTTTATTTTGTTTCTTTTTA
TTTAGACCTTCTTCATATTTAGTTTTATCTATTAATTGATAGTATCTACCGGCACGAACTCGAATTTGATCGCCTTCCATATCGGTCATTTCTAGTAGAA
ATTATGAATTGCTGTAATGGATCTTTCTATTTTCTATTTTTCTATATAGTAGAATATAATGGCTCTTTCTTACAATACAAGAGTTTCTTACAGGAGTGAA
ACAAAACCAAAGAAAAATAAAAAAGAATAACGTTTGACAAAATGATCAATGCAAAATGATACCCCTATCCCTATTGTTTTGCTACATGGCGTATTGGCTT
TGCCGTAGAGCTGAGATTCAGGCAATTGCAGATGATATAACTAGTAAATATGTTCCTGTCCGCCCCAGCAAGAAAACGTATGCGTGTGTACGGAAGCGCA
ACGGCTTTCGCTCCTTGTCGGGTAAGTTCCGACCCGCACGAAAGGCGTAACGATCTGGGCACTGTCTCGGAGAGAGGCTCGTAAAATGGAAAGGGGCCTT
TTTCTAAAGAAAGAAAGATGCTAATTTGATTAATATCAGGAGATCAAATGAATTTATGCTTCACTAATTGAATGATAAATAACTACAAGCGAAGGGGCGA
AGCATAATTTTACATTGGATTAAGTATTCCATATATTAAAAATATGAGTAAAGGATCTATGGATGGAGATACAAAAAAGTTTTTTGCAAAGTGGTATAGG
GAGTTGATCCAATATATATGGAATCATGAATAGTCATTGGTTTAGTTTTTTGTATACTAATTCAAACTTGCTATCTAACCCGCAA