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Detailed information on CNT30150154


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549212Brachypodium distachyonIpomoea triloba78.9329.9391.36903forward
CNT30272552Brachypodium distachyonChenopodium quinoa76.2269.3290.02872forward
CNT30730494Brachypodium distachyonCorchorus capsularis74.1396.3692.1848forward
CNT30632746Brachypodium distachyonCapsicum annuum13.9922.1391.25160reverse complement
CNT30396824Brachypodium distachyonTriticum turgidum6674.9898.54755reverse complement
CNT30552690Brachypodium distachyonOryza glaberrima83.362.2597.48953forward
CNT30442196Brachypodium distachyonAegilops tauschii72.998.3598.92834reverse complement
CNT303548Brachypodium distachyonZea mays74.9160.1898.48857reverse complement
CNT30205642Brachypodium distachyonHelianthus annuus70.9878.4592.86812forward
CNT30688674Brachypodium distachyonTriticum urartu72.3862.8799.03828forward
CNT30596724Brachypodium distachyonOryza meridionalis41.2619.5198.31472reverse complement
CNT30410483Brachypodium distachyonPapaver somniferum78.5843.9492.66899forward
CNT30642274Brachypodium distachyonCannabis sativa50.5270.7592.04578reverse complement
CNT30104374Brachypodium distachyonOryza rufipogon78.3267.4797.54896reverse complement
CNT30576813Brachypodium distachyonOryza barthii17.2226.7397.97197forward

Expression of CNT30150154

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MSALSSDFPRASGITAETATGSPPIRGWSDRSMEIG*

Sequence

>CNT30150154
GATCCTGGCTCAGGATGAACGCTGGCGGCATGCTTAACACATGCAAGTCGAACGGGAAGTGGTGTTTCCAGTGGCGAACGGGTGAGTAACGCGTAAGAAC
CTGCCCTTGGGAGGGGAACAACAACTGGAAACGGTTGCTAATACCCCGTAGGCTGAGGAGCAAAAGGAGAAATCCGCCCAAGGAGGGGCTCGCTGAGATA
CCACTCTGGAAGAGCTCGGATTCTAACCTTGTGTCAGACCCGCGGGCCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGG
TAACGGAGGCGTGCAAAGGTTTCCTCGAGCCAGATGGACATTGGTCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACTCACCCGTCGAGCAGA
GACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATAACAGGCTGATCTTCCCCAAGA
GTCCACATCGACGGGAAGGTTTGGCACCTCGATGTCGGCTCTTCACCACCTGGAGCTGTAGGTGGTTCCAAGGGTTGGGCTGTTTGCCCATTAATGCAGT
ACGTGAGCTAGGTTCAGAACGTCGTGAGACAGTTCGGTCCATATCCGGTGTGGGCGTTAGAGCATTGAGAGGACCTTTCCCTAGTACGAGAGGACCGGGA
AGGACGCACCTGTGGTGTACCAGTTATCGTGCCTACGGTAAACGCTGGGTAGCCAAGTGCGGAGAGGATAACTGCTGAAAGCATATAAGTAGTAAGCCCA
CCCCAAGATGAGTGCTCTCTCCTCCGACTTCCCTAGAGCCTCCGGTATCACAGCCGAGACAGCGACGGGTTCTCCACCCATACGGGGATGGAGCGACAGA
AGTATGGAAATAGGATAAGGTAGCGGCGAGACGAGCCGTTTAAATAGGTGTCAAGTGGAAGTGCAGTGATGCATGCAGCTGAGGCATCCTAACGAACGAA
CGATTTGAACCTTGTTCCTACACGGCCTGATCAAATCGATCAGGCACTTGCCATCTATCTTCATTGTTCAACTCTTTGATGAAAAGATGAAAAAACCAAA
AAAAGCTCTGCCCTTCCATCTCTTGGATAGATAGAGAGGGAGGG