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Detailed information on CNT30150050


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 8e-99

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30189392Brachypodium distachyonSecale cereale34.660.6892.44463forward
CNT30304238Brachypodium distachyonTriticum aestivum34.9861.4293.16468forward
CNT30396078Brachypodium distachyonTriticum turgidum35.1324.8292.34470forward
CNT30666718Brachypodium distachyonTriticum dicoccoides35.1370.5792.77470forward
CNT30127456Brachypodium distachyonCorymbia citriodora33.6356.6890450forward
CNT30686718Brachypodium distachyonTriticum urartu35.1321.5391.91470forward
CNT30722378Brachypodium distachyonTriticum spelta32.0670.6893.24429forward
CNT30349330Brachypodium distachyonEragrostis tef34.8330.0691.42466forward
CNT30107357Brachypodium distachyonOryza longistaminata34.661.9890.28463forward
CNT30115854Brachypodium distachyonOryza nivara34.9862.0791.24468forward

Expression of CNT30150050

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MKPISHGKRKILSNATVIKDQIKPQELMQISRQIIMPNFTYAFS*

>peptide 2 (69 aa)
MRRCWSGGMPSLSWILALTLSMVSDDSTSRVMVLPVKVFTKICICRRIPRQHGKPPRVDKQSTRTKQKV*

>peptide 3 (44 aa)
MPSLSWILAFTLSMVSELSTSRVMVLPVRVLTKICIPPRRRRTR*

Sequence

>CNT30150050
CCACAGTTTAAAAACTAAAATACAGATCTGCAAGACTTCCAGGTCACATGGTCAGATAAAAACATGAAGCCCATATCACACGGTAAAAGAAAGATACTAA
GCAACGCAACAGTGATCAAAGATCAAATCAAACCACAGGAACTGATGCAAATAAGCAGACAGATTATAATGCCAAACTTCACTTATGCTTTCTCATAGTA
CTTAAAACCATACTGCTATAGCAGTAACTGTTTGCACGAAACCAACAGACACTGGGGGGACTCGATGGTCCATCAACCAGACACAGGTAGACTTAACACG
AACTGAGACAGATACTTCAGAGGGCAAGAGCAGACCATTACTGACCACCTCGAAGGCGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTC
AGCAAGGGTGCGACCATCCTCCAGCTGCTTTCCTGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTG
TCGATGGTGTCAGAGCTCTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATACCACCACGCAGACGCAGGACAAGGTGAA
GGGTGGACTCCTTCTGAATGTTGTAGTCAGCGAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTC
CTTATCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCAGACGACTCAACCTCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAGATCTGCATC
TGCAGAAGAATCCCCAGACAGCATGGTAAGCCTCCACGAGTAGACAAGCAGTCAACACGAACAAAACAGAAAGTATAAACATATAGATACGCCTCCATAC
ATCCTATCCAAGATAATCAAAACAATAGATAAGAAACATACAGATTAACAGATGAGACGCAAGCAATCAGGAATTCCATAAAAAAAATAGACAAGCACCC
GATTAACAATTCTAGATCTAGAGGTGATAAGGCCTGCGTATTCGAGATATTGACACGGATCTAACACAAACCAAAGATCTGACGCCGAAACTCATCATCG
GACCAGGAACATGCAGGAATCGAACAAATCTACCAGTAATTTCCGCCCCCAACGACTTGAGATTCGACGTAGCGGCTAGGGAACAACACGTAGACCTAGA
AGACGAGACGGGGTAAAGGGGGGGGGGGGGGGGTGAAGCAGCTCGGTACCTTGGGGAGGCGGGGGGAAGGAGATTCTTCGACGAGCCTCGAGGCGACCGG
AGACGAGATTTGGGGATCGGATTTGTTGGTTCCGTTCC