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Detailed information on CNT30150023


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523577Brachypodium distachyonSetaria italica60.2773.0281.42452forward
CNT30377120Brachypodium distachyonArabidopsis thaliana29.635.0281.08222forward
CNT30195835Brachypodium distachyonPisum sativum25.4775.281.68191forward
CNT30591824Brachypodium distachyonMusa acuminata12.6724.0585.2695forward
CNT30668234Brachypodium distachyonTriticum dicoccoides78.410088.27588forward
CNT30312316Brachypodium distachyonCamelina sativa30.2760.781.5227forward
CNT3016764Brachypodium distachyonZea mays27.3336.4886.83205forward
CNT30688678Brachypodium distachyonTriticum urartu83.4710088.5626forward
CNT30574226Brachypodium distachyonVitis vinifera28.2742.4881.13212forward
CNT30497803Brachypodium distachyonDigitaria exilis63.8766.6284.76479forward

Expression of CNT30150023

Peptides detected in this lncRNA

>peptide 1 (43 aa)
CSLEKSDCMGSSSLGCLENKHVKGCTWPKKDCSSVKLDCSLAK*

>peptide 2 (82 aa)
MLGCIQAMSGCMQEMLGCMLERSDYKLAMWDCSSEKWDYNLVMWDCSLAMWDCSLEMWGSMTDWLESTMDLLGSTTDLLGCS*

>peptide 3 (32 aa)
MDCNHHQRMGCSLKGQVRMPCPQHMGRTEHLK*

Sequence

>CNT30150023
CTGTAGTTTGGAGAAGTCTGACTGTATGGGCTCATCATCCTTGGGCTGCTTGGAGAATAAGCATGTGAAGGGCTGTACTTGGCCGAAGAAGGATTGTAGC
TCGGTGAAGTTGGACTGTAGTTTGGCGAAGTAGGGCTGTAGCTCGGCGATGTTGGGCTGTATCCAGGCGATGTCGGGCTGTATGCAGGAGATGTTGGGCT
GTATGCTGGAGAGGTCGGACTATAAACTGGCGATGTGGGACTGTAGCTCGGAGAAGTGGGACTATAACTTGGTGATGTGGGACTGTAGCTTGGCGATGTG
GGACTGTAGCTTGGAGATGTGGGGGAGTATGACGGACTGGTTGGAGAGTACGATGGACTTGTTGGGGAGTACGACGGACTTGTTGGGCTGTAGCTAGGAG
AGCCAGGCGTATATGATGGAGAAGTGGGACTATAGCTGGGTGATGCGGGACTATATGATGGAGAAGTCGGGCTGTATCCCTGTCCTGGCCCTGGACTGAA
GACTGGAGAAGATGGACTGTAACCACCACCAGAGGATGGGCTGTAGCTTGAAGGGACAGGTGAGAATGCCATGCCCCCAACATATGGGGAGAACTGAGCA
TCTGAAATAGGGGAAGACCTGAAATTAGGACTCAACATTGGTGACATCATTCCTCCATCATGGTATGGTGTCCCAGAAGGCGAGGCACGCGCAGGTGTCA
TGCCAATATATTCTAAACCTTCAACATAGCTCGGGAGCTGAAGCTCAATG