Detailed information on CNT30149913


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30667627Brachypodium distachyonTriticum dicoccoides2.9126.0189.6177forward
CNT30459719Brachypodium distachyonSaccharum spontaneum2.8730.2890.7976forward

Expression of CNT30149913

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MHSQSFTANLYFRIAVQVNFDMLLFFIERE*

>peptide 2 (30 aa)
MDHVAANKKKEAFIYHQCIANHLPPIFISV*

>peptide 3 (48 aa)
MRPDRGRPTQYGWRAPVALRYIKRWGAGRRNMRFLCVAATPPSHLTLI*

>peptide 4 (49 aa)
VWFLIGRFAGDCPRSPVTTLRQMREPILVTSVNSGLSMSSSDLTPMLLI*

>peptide 5 (31 aa)
LVPHRKIRRRLPKIASNNSPPNAGAHSGDFG*

>peptide 6 (43 aa)
MTPGGQSQSKRAPSPLDSQPSTFLYACMHLSTCTQNKIFMNNS*

Sequence

>CNT30149913
GTCTGGTTCCTCATCGGAAGATTCGCCGGCGATTGCCCAAGATCGCCAGTAACAACTCTCCGCCAAATGCGGGAGCCCATTCTGGTGACTTCGGTTAACT
CTGGCTTATCCATGAGCTCGTCAGATCTGACACCCATGTTACTCATCTAGAATTTTTGGTTCACTCCAATATCTGACATAATCACGTATCATTCAAAAAA
TAAATTAAGAACCGGTCGAGTGGTCAAGACGCCCACCATTTTCAATAAGAAATGGGGATCACAGTGGACATATATAACAGCTTCATCCACATTTTGCCCA
TGTAGTCATGCGATTCTGCAATGTCTTCATGAGTTTTATTCCCAACTCTGATCGGCCTATGAAATGAATGTGACACATGGCACAATGGGTTAAAGGGTGC
CCAGAACTTTGGGCTGAGCAATACAGATCCAACCTTCCATAAATCCAGATCCAGCCTACCCACAGGAGAAGGAAGAAAAAGAATCCGTGAAAGGAAGACC
TGTAACAATCAAAGATGGACCATGTTGCTGCCAACAAAAAGAAAGAGGCATTCATTTACCACCAATGCATAGCCAATCATTTACCGCCAATCTTTATTTC
CGTATAGCAGTGCAAGTTAATTTTGATATGCTTCTTTTCTTTATTGAGAGAGAATAACCTGTACTTTTTTTTCAAACTGGAGAATCATTACAAGTTCAAT
ATTTTGGATCATAAAATCTAGAAAATACAAGGCAACTCCTATAATGAAGAATTATAATTAAATCTCTAAAAGACATCTTCTCCGTGGTATCATTCTTTGC
ACCATTAAATGCTGTCAAGACTTTAACATAAAAACTGCAATTAGTTTAGACTGGAACAACAACATTGCCATTTGTATGATTGCACGAACTTGACTACTTT
CAAATGTTTCGGAAAGCACATTGAGTCGCTCATCCAAAAATATGAAAAGCCATGAGCGTTGAACGTACTTAAGCCGGGGATGACCCCCTAAAGGTACAGG
TCGTCGAACAACAAGATCTTCACCAGAATGCCACGGGAGGATTTCAAAGATACAAAAGATAAAACCAACAAAACCACTGTGATACACTAACAAACTCAGC
AGATACGTATTGACGGATCTGCTAGAACACAGATCTAAGATCCGCAAGATCAGGTACACTGAAACTACGGTAATCCAAGATCCGCAAGAACGAGTATAAT
GAATCTATGGTGACTAAAACTCTCTGACTCCGTGGCAACGCCCTTTAAGGTAACACCACAACAGAGGATGAACCAGACTATCTGAATTCGCGATGGCATC
ACAACCTCCATCATTGTGAACCAAACAATTGGTATAAACAAACACTTATGAATACTCTTAGGAGGAATCTGTTAGAGTGATCTCCACACCGTGTGGGCCC
AACGGCCCACCGGGCCTAGATCTGATGCGCCCTGATAGGGGGCGCCCAACCCAATATGGTTGGCGGGCCCCTGTCGCGCTGCGCTATATAAAGAGGTGGG
GGGCCGGGCGACGCAACATGAGGTTCCTCTGCGTCGCCGCCACCCCGCCGTCACACCTAACACTGATCTAAAGGAAAGGCGCAGAGGCGACAAGAAGCTC
CGCCACCGCTTCACCCAACCCTGGCCATCACTCCCTCCACGCCGACCATGACGACAACGCCGGCCTCATCGAGCCAAGGAGAAGGGTGCAGGGGCTAGCT
TTCTTTCCTTACTGTAGGTCGACATGACACCCGGGGGCCAAAGCCAAAGCAAACGTGCACCCTCGCCTTTGGATTCACAACCATCTACCTTCCTATATGC
ATGCATGCATCTTTCAACGTGTACACAAAACAAGATCTTTATGAACAATAGTTAGGGGACAGTGTCACACTGTGTACGTTTCAACATATGCATGCATGTA
GGTAGTCTAGCTAGCTAGCTACCTATCATCTAGTCTACCAATAGTTGCAGGAGATATATCTTGCAAAGCCCTGCAGTAATTAAAGGTGCGTGGATGATGC
ATGGTCAAATGCACATTTGGTAATAGTCTGAACTTGCTGTCTTGCTCAGTGGTTGTGCTATAGCTGTACGTACGTGTATGGAATTCTCCTCCTGAACTCG
CCGTAAAGAAACCATGGCCTCACGCTCACTTTGAAGATCTCTGTGTGGAGTAGTAATATTTGGCGGAGAATCTCTCCTGATGGATTGGTCGATCGAGCTG
AACTGAGACCAGCACGCGCGAGTCTCATCCGGCCTGGCCTGCAACACGAATTGTCCACTCAGAATCAGTCATGAATGCAGTGCACCATGCAAAAGACAAA
CACAAAGAAAGACATACATAGACTCAAAATTATATATGTCTCCTAATCCTCGAATCCCGAAAAGGTAACATTTTGTGTGTGTATTCTTTTGAACAGTCAA
AACGTAGAGTAAGTTTCTTAGAACTGCAAGAACTATTTTTCTCCTAATTGTTAAGGAAACTACCGGGCACCGGCAACTTCTGTCATGTACATTTAATTAG
TGAGCTGAACGCTGTATGTGCGAGAATATTTTAATATGAGAACAATCTCACATGTTAATGATGGAGCATGTACTATGTGCTCCAAAGAGTTCTTCTGAAA
AACAATTCTCACTTCTTTCCGATCTGTGAAAAGGGTACAAAAAAA