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Detailed information on CNT30149874


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9MTK5|PSBE_OENEH, E-value = 2e-27

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30277508Brachypodium distachyonChenopodium quinoa15.1322.9789.74195forward
CNT3020910Brachypodium distachyonCitrullus lanatus5.3531.0895.6569forward
CNT30286499Brachypodium distachyonTriticum aestivum22.4222.2798.27289forward
CNT30221820Brachypodium distachyonHordeum vulgare20.0213.189.15258reverse complement
CNT30234601Brachypodium distachyonBrassica oleracea22.9662.8588.85296forward
CNT30555951Brachypodium distachyonOryza glaberrima50.579.2994.62651forward
CNT30666971Brachypodium distachyonTriticum dicoccoides4.8124.3110062forward
CNT3060074Brachypodium distachyonArabidopsis lyrata14.7433.4586.84190forward
CNT30679284Brachypodium distachyonTriticum urartu21.0287.4293.73271reverse complement
CNT30355329Brachypodium distachyonLactuca sativa24.5244.5191.14316forward
CNT3025537Brachypodium distachyonPopulus trichocarpa13.1942.6190.59170forward
CNT3099863Brachypodium distachyonOryza rufipogon11.1735.6488.89144reverse complement
CNT30576251Brachypodium distachyonOryza barthii16.2937.5798.1210forward
CNT30117202Brachypodium distachyonOryza nivara22.4215.5199.31289forward
CNT30603960Brachypodium distachyonOryza punctata35.8436.5592.21462reverse complement
CNT30727046Brachypodium distachyonLupinus angustifolius40.1163.9987.43517forward

Expression of CNT30149874

Peptides detected in this lncRNA

>peptide 1 (40 aa)
LLALFCLGSGEVVHKQRGREYGGGQIYCDCEQIELLDLFD*

>peptide 2 (36 aa)
MNNPVSNTGNNISKRTFSRASRHAELPKFLYIQKRN*

>peptide 3 (34 aa)
MNPIQNMNHKRKHLLNQSQEYQLPYLSAKEEFFQ*

Sequence

>CNT30149874
CTCTTGGCCCTCTTTTGCTTAGGTTCAGGGGAGGTAGTGCACAAACAGAGGGGAAGGGAATATGGCGGGGGACAAATTTATTGTGATTGTGAGCAAATAG
AATTGCTTGACTTGTTCGATTAAGTTCAATTTAGAACTTACAGAAATTTTGCAAAAAAAACGTAAACTTTTCCGTTGAAGGGTGGTTTTTTTTAGGCTAG
TTGAGTAGTTTTGATTAAGGAGACTCCCTTCGTGGAATAAAATATTGTATTGGATCCTCGATTGATCTCTTTTTCTTATTGCTTCATAAGAGTGAATCGA
ATAGATTAAAGTCGCGTTATAAGAGTAAGAATTCCGCGGGTCCTTTCCGCTCTAATCAGATAAAAAAAAGGGGGGGTAAGGACCCGCTAAGCTCCTACTT
TTTCATGTTTCCAATCCGATCCCTCCGATTACTATAGAGATGAACCCAATCCAGAATATGAACCATAAAAGAAAACACCTACTAAACCAATCACAGGAAT
ACCAGTTACCGTACCTATCAGCCAAAGAGGAATTCTTCCAGTAGTATCGGCCATTTCCCCTACTTTCCTCCACATTTTATCAAGTGGTCATGCTAGAGAC
AAAAACAGTCATGGATAGTTATGTTATAAGGATGGTATCCTTCCAAATGGGATAAGAGAGTTCTTACTACTCTCTTCTTTTCTCTCAATTGAAGAAGTAA
TTGGAAAACAAAACAGCAAGTACAAAAATGAGTAATAAACCCCAGTATAGACTGGTACGATTCAATTCAACATTTTGTTCATTCGGGTTTGATTGTGTCA
TAGTTCTATAGTTGGAATTTAGTTTATCGTTGGATGAACTGCATTGCTGATATTGATCCCAAGAAAAAAACAGTAGGTACAGCTAGTCCGTGAATAGCCA
GCCATCGCACTGTAAAAATAGGATAGGTTCGATCTATGGTCATTGAGGGCCTCCTAAAAAGATCTACTAAATTCATCGAGTTGTTCTAAAGAATCAAAAC
GGACTTCCAAACACGTCATAAGCTAAACCCGTACTGACAAATAACCAACCCGCAATGAATAGGGAAGGTATAGTAATGCTATGAATAACCCAGTATCGAA
TACTGGTAATAATATCAGCAAAAGAACGTTCTCCCGTGCTTCCAGACATGCTGAGCTCCCCAAATTTTTGTACATTCAAAAAAGGAATTGATTCCGTAAA
AGATGGGATCAACCAGTAAATAAAAAATTACTGGTATTTCATCCTTGTGAGATTGTCAATTTTGTACCAAAGGTGTATTTTGAGTATAC