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Detailed information on CNT30149846


BLAST search results

BLAST vs Swiss-Prot:
sp|A2YWQ1|HSP81_ORYSI, E-value = 9e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675663Brachypodium distachyonSetaria viridis29.5728.1790.08131forward
CNT30378101Brachypodium distachyonArabidopsis thaliana22.3511.2283.8499forward
CNT30379122Brachypodium distachyonManihot esculenta26.1926.4886.21116forward
CNT30402735Brachypodium distachyonBeta vulgaris33.6310.9486.58149forward
CNT30631186Brachypodium distachyonVigna unguiculata33.6313.1585.91149forward
CNT30712266Brachypodium distachyonGlycine max22.5736.587100forward
CNT30635894Brachypodium distachyonCapsicum annuum34.312788.16152forward
CNT3095185Brachypodium distachyonSolanum tuberosum24.157.1987.85107forward
CNT30187559Brachypodium distachyonSecale cereale34.3122.7992.11152forward
CNT30562110Brachypodium distachyonActinidia chinensis20.7711.1484.7892forward
CNT30510308Brachypodium distachyonSolanum lycopersicum33.6357.7587.25149forward
CNT30554828Brachypodium distachyonOryza glaberrima36.5731.0385.8162forward
CNT30441217Brachypodium distachyonAegilops tauschii36.3421.6790.68161forward
CNT30250974Brachypodium distachyonAvena sativa27.9928.8491.94124forward
CNT30314068Brachypodium distachyonCamelina sativa24.157.0687.85107forward
CNT304322Brachypodium distachyonZea mays23.4818.2188.46104forward
CNT30227528Brachypodium distachyonAnanas comosus39.9524.3589.27177forward
CNT30625469Brachypodium distachyonDaucus carota31.69.3687.14140forward
CNT30352420Brachypodium distachyonEragrostis tef36.3426.0190.06161forward
CNT30362217Brachypodium distachyonSorghum bicolor27.0922.9485120forward
CNT30481150Brachypodium distachyonChara braunii28.899.0680.47128forward
CNT30107297Brachypodium distachyonOryza longistaminata50.3449.6787.44223forward
CNT30323609Brachypodium distachyonAsparagus officinalis39.0510.3987.86173forward
CNT30103353Brachypodium distachyonOryza rufipogon36.3416.0492.55161forward
CNT30577638Brachypodium distachyonOryza barthii56.4338.5887.6250forward
CNT30584451Brachypodium distachyonEchinochloa crusgalli26.8622.291.6119forward

Expression of CNT30149846

Peptides detected in this lncRNA

>peptide 1 (35 aa)
STTNEVTTIIRQRFTIPSSKLLEHRITYLAPSTAG*

Sequence

>CNT30149846
AGCACAACTAATGAAGTTACTACGATAATACGGCAACGATTTACCATACCAAGTTCGAAACTCTTAGAACACCGTATCACATACCTAGCCCCATCGACGG
CAGGCTAGGCACTGTAACCACAAAAAATAATCCGACCATAAAAGACAGTAACCAAGACAAGCAACTCTAAAACAGAAACTTAACGATAATAGACTTAGTC
GACCTCCTCCATCTTGCTCTCGCCGGCATCATCCTCCAGCGCGGGCATATCTGTGTCATCAGCCTCGGCAGTCTCAAACAAGAGCATCACCAGGTCCTTG
ACTGACTTGTCGTTCTTGTCAGCATCAGCCCGCTTGCGCAGCTCCTCCATGATGGCATTCTCCGGGTTGATCTCCATGGTCTTCTTGCTGGACATGTAAC
CAGCCATGCTAGAGTCCCTCAGGGCCTGGGCCTTCATGATCCT