« Back to Brachypodium distachyon search


Detailed information on CNT30149732


BLAST search results

BLAST vs Swiss-Prot:
sp|C0LGR3|RGI3_ARATH, E-value = 3e-16

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690966Brachypodium distachyonOryza sativa54.7450.5886.15260forward
CNT30596662Brachypodium distachyonOryza meridionalis48.2134.3385.15229forward
CNT30369729Brachypodium distachyonOryza glumipatula99.1694.5885.14471forward
CNT30109108Brachypodium distachyonOryza longistaminata24.6319.9387.18117forward
CNT30100248Brachypodium distachyonOryza rufipogon59.7932.0985.21284forward

Expression of CNT30149732

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MTVVLVSMPSSCGRQPESWLLRRRSSRRESFACPIDDGIGPVSLLLARAR*

>peptide 2 (42 aa)
ERGALRGCPLVGEAWDAVLLHVQHAVLDQGRARRPDRREVVA*

>peptide 3 (39 aa)
NEAHSAGALWLARPGMQFFFTSSTPSLIRAEHAGPTDVK*

Sequence

>CNT30149732
TGAACGAGGCGCACTCCGCGGGTGCCCTCTGGTTGGCGAGGCCTGGGATGCAGTTCTTCTTCACGTCCAGCACGCCGTCCTTGATCAGGGCCGAGCACGC
CGGCCCGACCGACGTGAAGTAGTTGCTTGACAGCGTGAGGTTGGCGAGGCGGCCGAGCTTGCAGAGCGCGTCGGGGACCTGGCCGTAGAGGCGGTTCTCG
CCCAGGTTGAGCTGCTCGACGCTGCTGAGGCAGGAGAAGGATTGCGGGATCGGGCCCGTGAGCTGGTTCTTCCCGGCGTCGATGACCGTGGTTTTGGTGA
GCATGCCCAGCTCGTGTGGGAGGCAGCCGGAGAGCTGGTTGTTGAGGAGGAGGAGCTCGAGGAGGGAGTCTTTTGCTTGCCCGATTGATGACGGGATTGG
GCCGGTGAGCTTGTTGTTGGCGAGGGCGAGGTAGCTCAACTTGGAGATGCCGAGGTTGGCCGGAAGTGGCCCGGA