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Detailed information on CNT30149641


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673993Brachypodium distachyonSetaria viridis22.1279.7997.53446forward
CNT30404925Brachypodium distachyonBeta vulgaris13.4938.3191.18272reverse complement
CNT30525798Brachypodium distachyonPhaseolus vulgaris12.5532.7794.86253reverse complement
CNT30177674Brachypodium distachyonSecale cereale42.3642.0797.54854reverse complement
CNT30221081Brachypodium distachyonHordeum vulgare43.7543.5698.75882forward
CNT30538116Brachypodium distachyonBrassica napus25.0541.6795.64505forward
CNT3067405Brachypodium distachyonLeersia perrieri20.5410095.41414forward
CNT30647597Brachypodium distachyonRosa chinensis15.4861.1893.91312forward
CNT30203328Brachypodium distachyonHelianthus annuus35.9688.0995.17725forward
CNT30354697Brachypodium distachyonLactuca sativa27.8379.4695.54561forward
CNT30371139Brachypodium distachyonOryza glumipatula15.4362.8398.39311reverse complement
CNT30576588Brachypodium distachyonOryza barthii6.4529.6199.23130reverse complement

Expression of CNT30149641

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MERWNALRSERTPTAKALCWADTDTERRKLGEQMGFTVPWDWLWAFPTQLRWKAKKAPFRGGLSHQ*

>peptide 2 (53 aa)
MQALSGMIGRKASVGGFSSRRQIPGLNHGQAVETNKLQYGRGRGNFRWSGGMH*

>peptide 3 (42 aa)
MDRRWKLTSCSMVGAEGISDGAVECIEIGKNTNGESTLLGRH*

>peptide 4 (36 aa)
MISRWSERMISHTGTETRPRLLREAAVGNFPQWAKA*

>peptide 5 (36 aa)
MSALSSDFPRASGITAETATGSPPIRGWSDRSMEIG*

>peptide 6 (31 aa)
MGESLTEQCRVEVEGLRVVNFFSRRRNNDGI*

Sequence

>CNT30149641
ATCCATAATAGTGCGGAAAGAAAGCCCGGAGGAAGAGTGGCCTTGAGTTTCTCGCCCCTTTGCCTTAGGATTCGTTAATTCTCTTTCTCGATGGGACGGG
GAAGGGATATAACTCAGCGGTAGAGTGTCACCTTGACGTGGTGGAAGTCATCAGTTCGAGCCTGATTATCCCTAAACCCAATGTGAGTTTTTTCTATTTT
GACTTACTCCCCCGCCACGAGCGAACGAGAATGGATAAGAGGCTTGTGGGATTGACGTGATAGGGTAGGGTTGGCTATACTACTGGTGGCGAACTCCAGG
CTAATAATCTGAAGCGCATGGATACAAGTTTTCCTTGGAAGGAAAGACAATTCCGAATCCGCTTTGTCTACGAATAAGGAAGCTATAAGTAATGCAACTA
TGAATCTCATGGAGAGTTTGATCCTGGCTCAGGATGAACGCTGGCGGCATGCTTAACACATGCAAGTCGAACGGGAAGTGGTGTTTCCAGTGGCGAACGG
GTGAGTAACGCGTAAGAACCTGCCCTTGGGAGGGGAACAACAACTGGAAACGGTTGCTAATACCCCGTAGGCTGAGGAGCAAAAGGAGAAATCCGCCCAA
GGAGGGGCTCGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGATGGTCCGAGAGGATGATCAGCCACACTGGGACTGA
GACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGGAAGGCCTACGGG
TCGTCAACTTCTTTTCTCGGAGAAGAAACAATGACGGTATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAG
CGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTCAAGTCGCCGTCAAATCCCAGGGCTCAACCATGGACAGGCGGTGGAAACTAACAA
GCTGCAGTATGGTAGGGGCAGAGGGAATTTCCGATGGAGCGGTGGAATGCATTGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACA
CTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGCTTTACTGTTCCCTGGGATTGGCTTTGGGCCTTTCCTACGCAGCTTAGGTGGAAGGCGAAGAA
GGCCCCCTTCCGGGGGGGCCTGAGCCATCAGTGAGATACCACTCTGGAAGAGCTCGGATTCTAACCTTGTGTCAGACCCGCGGGCCAAGGGACAGTCTCA
GGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACTCACCCGTCGAGCAGAGAC
GAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATAACAGGCTGATCTTCCCCAAGAGTC
CACATCGACGGGAAGGTTTGGCACCTCGATGTCGGCTCTTCACCACCTGGAGCTGTAGGTGGTTCCAAGGGTTGGGCTGTTTGCCCATTAATGCAGTACG
TGAGCTAGGTTCAGAACGTCGTGAGACAGTTCGGTCCATATCCGGTGTGGGCGTTAGAGCATTGAGAGGACCTTTCCCTAGTACGAGAGGACCGGGAAGG
ACGCACCTGTGGTGTACCAGTTATCGTGCCTACGGTAAACGCTGGGTAGCCAAGTGCGGAGAGGATAACTGCTGAAAGCATATAAGTAGTAAGCCCACCC
CAAGATGAGTGCTCTCTCCTCCGACTTCCCTAGAGCCTCCGGTATCACAGCCGAGACAGCGACGGGTTCTCCACCCATACGGGGATGGAGCGACAGAAGT
ATGGAAATAGGATAAGGTAGCGGCGAGACGAGCCGTTTAAATAGGTGTCAAGTGGAAGTGCAGTGATGCATGCAGCTGAGGCATCCTAACGAACGAACGA
TTTGAACCTTGTTCCT