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Detailed information on CNT30149623


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695840Brachypodium distachyonOryza sativa28.9620.288.49139forward
CNT30224612Brachypodium distachyonHordeum vulgare52.0844.0184.8250forward
CNT30554643Brachypodium distachyonOryza glaberrima28.9629.2687.77139forward
CNT30367015Brachypodium distachyonSorghum bicolor28.9624.7885.61139forward
CNT30371090Brachypodium distachyonOryza glumipatula20.2120.1286.697forward
CNT30704690Brachypodium distachyonPrunus avium31.257.3888.67150forward
CNT30103269Brachypodium distachyonOryza rufipogon61.4632.8187.8295forward

Expression of CNT30149623

Peptides detected in this lncRNA

>peptide 1 (35 aa)
STTNEVTTIIRQRFTIPSSKLLEHRITYLAPSTAG*

Sequence

>CNT30149623
AGCACAACTAATGAAGTTACTACGATAATACGGCAACGATTTACCATACCAAGTTCGAAACTCTTAGAACACCGTATCACATACCTAGCCCCATCGACGG
CAGGCTAGGCACTGTAACCACAAAAAATAATCCGACCATAAAAGACAGTAACCAAGACAAGCAACTCTAAAACAGAAACTTAACGATAATAGACTTAGTC
GACCTCCTCCATCTTGCTCTCGCCGGCATCATCCTCCAGCGCGGGCATATCTGTGTCATCAGCCTCGGCAGTCTCGTCCTCATCGATGCTAAGGCCAAGC
TTGAGCATGCGGTGGATCCTGGTGCCGAAGGTCCTTGACTGACTTGTCGTTCTTGTCAGCATCAGCCCGCTTGCGCAGCTCCTCCATGATGGCATTCTCC
GGGTTGATCTCCATGGTCTTCTTGCTGGACATGTAACCAGCCATGCTAGAGTCCCTCAGGGCCTGGGCCTTCATGATCCT