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Detailed information on CNT30149545


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674320Brachypodium distachyonSetaria viridis28.5714.792.7196forward
CNT30522713Brachypodium distachyonSetaria italica28.5725.8892.7196forward
CNT30562824Brachypodium distachyonActinidia chinensis23.8114.398580forward
CNT30203517Brachypodium distachyonHelianthus annuus25.67.6584.8886forward
CNT30681999Brachypodium distachyonTriticum urartu28.5730.1990.6296forward
CNT30369350Brachypodium distachyonOryza glumipatula26.1912.6689.7788forward
CNT3022005Brachypodium distachyonPopulus trichocarpa26.4911.686.5289forward
CNT30328090Brachypodium distachyonAsparagus officinalis25.625.4484.8886forward
CNT30575061Brachypodium distachyonOryza barthii26.199.6889.7788forward
CNT30117026Brachypodium distachyonOryza nivara26.1913.189.7788forward

Expression of CNT30149545

Peptides detected in this lncRNA

>peptide 1 (32 aa)
EINRTHTSIKSTVPTIWAVKHTQTAAAVHTHW*

>peptide 2 (79 aa)
MGSQTHTDGSSSTHTLVAGKREAIREDSLLASSVRPEERSALTPPRPADPHPPRSPLRPQRWRTGTAGSHGRSMGRTQP*

>peptide 3 (43 aa)
LKLTEHTQASSLQFPRYGQSNTHRRQQQYTHTGSRQARSHQRR*

Sequence

>CNT30149545
CTGAAATTAACCGAACACACACAAGCATCAAGTCTACAGTTCCCACGATATGGGCAGTCAAACACACACAGACGGCAGCAGCAGTACACACACACTGGTA
GCAGGCAAGCGAGAAGCCATCAGAGAAGATAGCCTCCTGGCCTCCTCGGTCAGACCGGAAGAACGGAGCGCACTCACTCCTCCTCGGCCTGCAGATCCTC
ATCCTCCTCGTAGTCCTCTTCGTCCTCAGCGGTGGCGGACCGGTACTGCTGGGAGCCACGGGAGGTCAATGGGGCGAACCCAACCATAAAGAAGTGGAGA
CGGGGGAATGGGATAAGGTTCACTGCCAACTTCCGG