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Detailed information on CNT30149525


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532843Brachypodium distachyonEucalyptus grandis38.7415.9883.76117forward
CNT30316236Brachypodium distachyonCorylus avellana38.7425.4982.05117forward
CNT30547527Brachypodium distachyonIpomoea triloba33.4423.3382.18101forward
CNT30513000Brachypodium distachyonJuglans regia35.7621.683.33108forward
CNT30372986Brachypodium distachyonArabidopsis thaliana33.449.8883.17101forward
CNT30488117Brachypodium distachyonOlea europaea22.8514.1486.9669forward
CNT30711584Brachypodium distachyonGlycine max38.4116.4881.9116forward
CNT3045373Brachypodium distachyonPrunus dulcis35.7613.7882.41108forward
CNT30191304Brachypodium distachyonSecale cereale38.748.9993.16117forward
CNT30300473Brachypodium distachyonTriticum aestivum38.7412.0993.16117forward
CNT30224354Brachypodium distachyonHordeum vulgare38.7422.5491.45117forward
CNT30395070Brachypodium distachyonTriticum turgidum39.0715.4291.53118forward
CNT30561656Brachypodium distachyonActinidia chinensis33.447.2184.16101forward
CNT30510505Brachypodium distachyonSolanum lycopersicum29.88.2983.3390forward
CNT30552635Brachypodium distachyonOryza glaberrima37.7510.9886.84114forward
CNT30440797Brachypodium distachyonAegilops tauschii38.7416.0793.16117forward
CNT30313757Brachypodium distachyonCamelina sativa33.4411.5288.12101forward
CNT3059659Brachypodium distachyonArabidopsis lyrata35.124.4283.96106forward
CNT30137280Brachypodium distachyonLolium perenne37.7525.2885.09114forward
CNT3015270Brachypodium distachyonZea mays36.7524.589.19111forward
CNT30605685Brachypodium distachyonGossypium raimondii29.1411.5286.3688forward
CNT30683923Brachypodium distachyonTriticum urartu39.0712.991.53118forward
CNT30345702Brachypodium distachyonEragrostis tef38.4114.3687.07116forward
CNT30596122Brachypodium distachyonOryza meridionalis38.4116.7688.79116forward
CNT30369654Brachypodium distachyonOryza glumipatula37.7512.9586.84114forward
CNT30107537Brachypodium distachyonOryza longistaminata37.7512.485.96114forward
CNT30332479Brachypodium distachyonDioscorea rotundata27.1528.9885.3782forward
CNT30100260Brachypodium distachyonOryza rufipogon37.7515.8886.84114forward
CNT30576148Brachypodium distachyonOryza barthii38.4121.2889.66116forward
CNT30497456Brachypodium distachyonDigitaria exilis22.8523.6386.9669forward
CNT30116094Brachypodium distachyonOryza nivara37.7512.9586.84114forward
CNT30604019Brachypodium distachyonOryza punctata38.4134.3288.79116forward

Expression of CNT30149525

Peptides detected in this lncRNA

>peptide 1 (41 aa)
RRDGKQHSGKCTNEPNIRRRIGKYSVARYHTGRTKLVHLTT*

Sequence

>CNT30149525
TAGACGAGACGGAAAGCAGCACTCAGGAAAATGTACCAATGAACCAAACATAAGAAGACGGATAGGAAAATATTCGGTAGCACGCTACCATACAGGACGC
ACAAAACTGGTTCATCTGACAACCTAAAGAGCTGAATCCGAACAAAAGGTAATTTCTCCTAACAAACTAAGTAGACCAAAAATGGGGCTCTAGCAGCCTT
GGCTTGGCTGTGAGCTGAGAAGCATATATGACTCTCCTGGCTGTTGGGATGACCTGACCACCACCCCTATGAATAGCATCAGTGTGGAGAACGACATCAC
AG