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Detailed information on CNT30149335


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30293634Brachypodium distachyonTriticum aestivum24.0886.2288.14388forward
CNT30222122Brachypodium distachyonHordeum vulgare12.2365.2390.36197forward
CNT30437851Brachypodium distachyonAegilops tauschii20.7945.2789.85335forward
CNT30245193Brachypodium distachyonAvena sativa13.414886.57216forward
CNT30682228Brachypodium distachyonTriticum urartu19.1247.4689.61308forward
CNT30341732Brachypodium distachyonEragrostis tef8.0128.6783.72129forward
CNT3099878Brachypodium distachyonOryza rufipogon17.1339.4383.33276forward
CNT30574979Brachypodium distachyonOryza barthii8.5730.0785.51138forward
CNT30594885Brachypodium distachyonEragrostis curvula15.8323.0681.18255forward

Expression of CNT30149335

Peptides detected in this lncRNA

>peptide 1 (29 aa)
PHRRPHLLSREPHCRDLLDHVVDCHPVVA*

>peptide 2 (37 aa)
MVLIVPTEYCIKLVLNLLLPPFLNSCLKFAQIWIIDS*

>peptide 3 (46 aa)
LRTVALTCSLENPIVETFSTTSSIATLLLPDEPVGLELTGAACGSI*

>peptide 4 (48 aa)
MQLEGLMASVNVVNGLQTVLEAGFEALGVEEAHLEQEVQEMLVVGKGS*

>peptide 5 (49 aa)
MGLSFGCLELCKIDQCFHNFLLVAHNLHTYLDLYVAIQELKANGPHSAD*

>peptide 6 (65 aa)
MVVDTAAVELEVPVAVELAGLDTAVVVLEAPVAVELEGIDTADEWPQFAEQRACSRDHLVKLVLR*

>peptide 7 (49 aa)
MAYKLCWRLVLKHWGWRRRIWSRKCRKCLWLGRGRDLMLRLNSCLLWSH*

Sequence

>CNT30149335
CTCCGCACCGTCGCCCTCACCTGCTCTCTAGAGAACCCCATTGTCGAGACCTTCTCGACCACGTCGTCGATTGCCACCCTGTTGTTGCCTGACGAACCGG
TCGGGCTGGAACTGACTGGCGCTGCTTGCGGTAGTATCTGAGCCGTGGGGAGCCTGCTGCCGTAGCTGTTGCCGCCACCCCCGGAGGTTGGCCCTGAGGG
AGCAAAAGGTGTCGGCTTCATTCCAGCATTGCCACGGTGAGAAGGTGACCCAGTGTAACCATATGAGTCGGAGAAACCGCTCCCCCCCTGTGGCCCGTAC
CCAGTGGAACCATAAGATGGTGGTGTCCCAGAGTTGGGCCTAGATGCAGGAGGTTCATACATGCCAGGGTTCTGTCCATAGAAAGGAGGGGCTGGTTCAC
TAGGCGGTGGCATATAAGCTGAAGGAGGACGGACATTTGGTGGATAGCTATGAGGAGGCACATATTCTGTCTGCTGGGGTGCAGGAAGTGCAAGTGGGCC
TGAAGGGTTAACATTTGCAGACTGAGGTGGTTGTGAATATTGAGGAAAATGTGATGGTGGTTGATACTGCTGCGGTGGAGCTGGAGGTGCCTGTGGCTGT
GGAACTGGCGGGGCTTGATACTGCTGTGGTGGTGCTGGAGGCGCCTGTGGCTGTGGAACTGGAGGGGATTGATACTGCTGATGAATGGCCTCAGTTTGCT
GAGCAGAGGGCATGTAGTAGGGATCATTTGGTAAAGCTGGTACTGAGGTAACCGATGCAACTGGAGGGACTGATGGCATCTGTGAATGTGGTGAATGGCC
TACAAACTGTGCTGGAGGCTGGTTTTGAAGCATTGGGGGTGGAGGAGGCGCATTTGGAGCAGGAAGTGCAGGAAATGCTTGTGGTTGGGAAGGGGTCGTG
ACTTGATGTTGCGGCTGAACAGCTGCCTGCTGTGGAGCCACTGACTGCTGTCTCGAGTCTGCCTGTCCAACCCCACTGTTTTCTGACGAATGGGTCTCAG
TTTTGGGTGCCTGGAGCTTTGCAAGATTGACCAGTGTTTCCACAATTTCCTGCTTGTCGCGCATAATCTGCACACCTACTTGGACCTGTATGTAGCAATC
CAAGAATTAAAGGCGAATGGTCCTCATAGTGCCGACTGAGTACTGCATTAAACTGGTACTTAACTTATTACTCCCTCCGTTCCTAAATTCTTGTCTCAAA
TTTGCCCAAATATGGATTATCGATTCATAAAAAGTGTCTAGATACATGTAATATTTCGACAATAATTTAGGATCGGAGGTAGTATTTCACATAAGCTTAC
AACTGGAGTATTAGTAGAAAAGGTATATTCTATGAGTGTTTATTGCATAAAAGGTAATTATGTGTATAACATCATCCTGAGAAAAAAAATGAACCACACA
AAACATGAATGATAAGTTGAAAAGGGAAAGAGCTCAAAAAGCTAAGAAAAGACTACTGAGTTATATAAAAGAATTTTCAACTTAATTCCAGTATAGCAGC
TGTTGCCAACAATGACCAGTGGTGCGTTAGCACTTAGCACAACACTATGACCTGCCTACTGCCATAGCACAGTAAACTTACTTCAATATGACATCATTAC
TGAGCAAGAAC