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Detailed information on CNT30149302


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FJX2|RL262_ARATH, E-value = 1e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690207Brachypodium distachyonOryza sativa39.6374.7691.14237forward
CNT30522907Brachypodium distachyonSetaria italica43.4846.0293.46260forward
CNT30536141Brachypodium distachyonEucalyptus grandis33.1154.5581.31198forward
CNT30181670Brachypodium distachyonSecale cereale40.4784.6297.11242forward
CNT3082886Brachypodium distachyonBrassica juncea17.8941.6387.85107forward
CNT30230907Brachypodium distachyonAnanas comosus27.9356.2386.23167forward
CNT30714885Brachypodium distachyonMalus domestica golden29.4336.1484.66176forward
CNT30720826Brachypodium distachyonTriticum spelta53.3453.5294.98319forward
CNT30597158Brachypodium distachyonOryza meridionalis59.752.0490.2357forward
CNT30355705Brachypodium distachyonLactuca sativa39.4664.6679.24236forward
CNT30371509Brachypodium distachyonOryza glumipatula59.761.6690.76357forward
CNT30105031Brachypodium distachyonOryza longistaminata55.5243.0690.06332forward
CNT30115704Brachypodium distachyonOryza nivara20.2335.891.74121forward

Expression of CNT30149302

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MTTSRSRDLNQSPGARSALRSLSSFSFVTTTLLGWMPTFTVDPFTFSLVIRSTWMTQRRR*

>peptide 2 (43 aa)
MGMERTLYLWRSSEERAADMSTRRTEDGAVKCALRHFRRELVTR

Sequence

>CNT30149302
AAAAGATATTATTCAGATCTGAACGAAGACTAAGCACAAGGAATTAAACATATAATAAAGTCTTCATACCAAAATTCAAGGAAGGCACAGCCATATGATA
GATGCACATTAAGGTTCCAAAACTCTCATAGACGAACATCATACGAATAAAGCAGCGGTTTTTCATGTCCTAACAGATGCGGTGGTGATTAAAAGCTAGA
TAGGGAGACAGTATGACAACCAGCAGATCCCGGGATCTTAATCAATCTCCTGGAGCGAGGAGTGCCTTGCGGTCCTTGTCGAGCTTCAGCTTCGTGACGA
CGACCTTGCTGGGGTGGATGCCGACGTTCACAGTGGATCCGTTCACCTTCTCCCTGGTGATCCGCTCCACGTGGATGACCCAGCGGCGGCGGTAGACCTG
CACCACCTTTCCCTCGCGGCCCTTGAAGGTACCGCGCACCACCTGCACCTCGTCGTCCTTGCGGATGGGGATGGAGCGGACGTTGTACTTGTGGCGCAGC
TCCGAGGAGAGGGCCGCGGACATGAGCACGCGGCGGACGGAGGACGGCGCCGTGAAGTGCGCCTTGCGGCACTTCCGGCGGGAGCTCGTGACGCGGGG