Detailed information on CNT30149227


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9AWL7|GIGAN_ORYSJ, E-value = 1e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30246648Brachypodium distachyonAvena sativa102.6925.4586.89267forward
CNT3066684Brachypodium distachyonLeersia perrieri76.1562.4684.85198forward
CNT30603551Brachypodium distachyonOryza punctata78.4623.2984.31204forward

Expression of CNT30149227

Peptides detected in this lncRNA

>peptide 1 (32 aa)
HSMHLSISACQLTMLAAAHWYVGLWTPFRCSP*

>peptide 2 (85 aa)
PLYASLHICLPVDHACGRTLVRGALDAVPLLPLNDLGGIYWSTVQDVAKDGHAECAYMCARVGKAADGRHTFSRFDRPSATATPGS

>peptide 3 (52 aa)
MILVEFIGPLFKMSRRTDMLSARTCALGWERQRMVDIPSADSTGHQQLLHLGL

Sequence

>CNT30149227
CCACTCTATGCATCTCTCCATATCTGCTTGCCAGTTGACCATGCTTGCGGCCGCACATTGGTACGTGGGGCTTTGGACGCCGTTCCGTTGCTCCCCTTGA
ATGATCTTGGTGGAATTTATTGGTCCACTGTTCAAGATGTCGCGAAGGACGGACATGCTGAGTGCGCGTACATGTGCGCTAGGGTGGGAAAGGCAGCGGA
TGGTAGACATACCTTCAGCAGATTCGACAGGCCATCAGCAACTGCTACACCTGGGTCTCC