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Detailed information on CNT30149145


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENW2|YCF3_SACOF, E-value = 4e-82

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696451Brachypodium distachyonOryza sativa46.9415.1593.95843forward
CNT30618958Brachypodium distachyonSesamum indicum25.58.2287.77458forward
CNT3020650Brachypodium distachyonCitrullus lanatus24.5525.3491.16441forward
CNT30730408Brachypodium distachyonCorchorus capsularis23.9490.9190.93430forward
CNT30632297Brachypodium distachyonVigna unguiculata24.7225.1185.14444forward
CNT30201085Brachypodium distachyonPisum sativum24.5521.8390.02441forward
CNT3094383Brachypodium distachyonSolanum tuberosum6.4653.9589.66116reverse complement
CNT30194121Brachypodium distachyonSecale cereale45.7191.7394.52821forward
CNT30223767Brachypodium distachyonHordeum vulgare19.5493.3597.72351forward
CNT30390237Brachypodium distachyonTriticum turgidum37.8131.4294.11679forward
CNT30589320Brachypodium distachyonMusa acuminata7.2926.9596.18131forward
CNT30511784Brachypodium distachyonSolanum lycopersicum19.2152.5191.3345forward
CNT30556045Brachypodium distachyonOryza glaberrima46.9425.8393.95843forward
CNT30171250Brachypodium distachyonTrifolium pratense5.6227.6791.09101forward
CNT30598583Brachypodium distachyonFraxinus excelsior13.9825.285.66251forward
CNT30445979Brachypodium distachyonSaccharum spontaneum21.8810097.2393forward
CNT301761Brachypodium distachyonZea mays63.4720.11901140forward
CNT30232528Brachypodium distachyonAnanas comosus45.3241.1388.82814forward
CNT30217417Brachypodium distachyonKalanchoe fedtschenkoi21.2181.4187.14381forward
CNT30655373Brachypodium distachyonRosa chinensis25.510.9490.83458forward
CNT30627898Brachypodium distachyonDaucus carota24.514.2991.36440forward
CNT30689225Brachypodium distachyonTriticum urartu23.2735.4894.02418forward
CNT30595954Brachypodium distachyonOryza meridionalis29.5740.4494.54531forward
CNT30369168Brachypodium distachyonOryza glumipatula12.4261.197.31223forward
CNT3022800Brachypodium distachyonPopulus trichocarpa18.9310090340forward
CNT30332506Brachypodium distachyonDioscorea rotundata27.1753.5788.11488forward
CNT30103542Brachypodium distachyonOryza rufipogon22.4956.9898.02404forward
CNT30116311Brachypodium distachyonOryza nivara8.7441.8795.54157forward
CNT30604206Brachypodium distachyonOryza punctata11.085094.47199forward
CNT30550879Brachypodium distachyonOryza brachyantha12.5356.1192.89225reverse complement
CNT30114189Brachypodium distachyonFicus carica25.2211.588.3453forward

Expression of CNT30149145

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MAGSGPFLKRCFYRIPIHNNFYFWFRRTNNH*

>peptide 2 (36 aa)
MISSFLYYLPSFYFFIVIHWSNYILKSILGKCSDLL*

>peptide 3 (42 aa)
MEVHATQPKKDNGELPEMSTKDFSRDLLQITRMTIEIVSISM*

>peptide 4 (38 aa)
MDRKGLVFFQEISSQPSRKRFFLTPMNSMNSINARGKS*

>peptide 5 (51 aa)
MLEENHSSKNFFVLNAFYLEELATSTIFDGYRGIQSTNLMVVYYPNHSSQP*

Sequence

>CNT30149145
CACCTGAGCACTGGGTCCAATGTGAGTAGGATCACTTAGCCATGCTTCATAATTGGAAAAACGGGCACCATGGAAGTACATGCCACTCAACCAAAGAAAG
ATAATGGAGAGTTGCCCGAAATGAGCACTAAAGACTTTTCGAGAGATCTCCTCCAAATCACCCGTATGACTATCGAAATCGTGAGCATCAGCATGTAGGT
TCCAGATCCAAGTGGTAGTATCAGGGCCCTTAGCTAGTGTTTTTGAGAAATGGCCGGGTCTGGCCCATTCCTCAAAAGATGTTTTTACAGGATCCCTATC
CACAATAATTTTTACTTCTGGTTCCGGCGAACGAATAATCATTAAGTCCTCCTCTTTCCGGACAAGACATATAAAGAGACCTGCCAACTGTCTTTTTAGT
GAATCTTTGAAAGATAGATTTTGAAAGATAGATATTATGATTAGTTCTTTTCTTTACTATCTACCGTCCTTCTATTTTTTTATAGTTATTCACTGGAGCA
ATTATATATTGAAGTCAATCCTAGGCAAGTGTTCGGATCTATTATGACATAAGGATTAGGTGCCTAACGGACATTATATATCTTGAAAAAAAAATATATA
TATATATGTATATATTTCCCGATGTAAGAAAAAAATCTTTTTAAAATTTAATAAACTGGTGTATTTTTTTTTGAGAGTATAAGCTCCTATCTACATCTAC
TTTCCTTGAGCGTAATATAGGATTTTTTATTTGATTCTAAATTCCAAGATAACTCATTAGAATTATTTAAGAATTAATAAGATGGTCTTGATATATTAGC
AGTATTTAGATTGCCCCTCTTTTTATTCGCTTTATTACTTCTATTCTAGATCCTATCCCTCTGGTTTATCCTTATAAAATCTCATATAAAATAGAAGGTA
GAAGAAAGACGAACGGGATATAATGAAATTCTTGATTCGATCTTACGACCTAATTTATATGAAAAAGGAACGTGGTCTTATTCAAATTCAAAGCGCTTCG
TAATCTTCAACCAGTTCTGTGCTTCAATATAATTTCCCGGAGTAAGCGCTATAGCTTGTTTCCAATACTCAGCAGCTTGATCAAACCAAGCTTCTGCAAT
TTCTGAATCACCCTGTAGAATGGCCTATAGTCGCACGTAATGACAGATCACAGCCATATTATTAAAAGCTTGCGGTAAGAAGGGGTTTCGCTCTAGTGCC
CGGAAATAATATTCCAAAGCCTTTGTATGCTCTCCATTGCTTGTGTGTATAAGGCCTATGTTATAGAGTATATAACTTCGATCGTAGGGATCGATTTCTA
GTCGCGTAGCTTCATAATAATTTTGCAAAGCTTCCGCATAATTTCCTTCGGATTGAGCCAACATCCGTTACGGTCGTTCATTCTATTCAAAAAATCTCCG
TTCCAAAACCGTACATGAGGTTTTCATCTCATACGGCTCCTCCCTTCTGTACATAGTACTAAGCGAAATAATCTATAGAATCAAATTAGTCCCGTCTCAT
TATGGACCGAAAGGGGCTGGTATTTTTCCAAGAAATCTCTAGCCAACCTTCCCGCAAGAGGTTTTTCCTAACACCAATGAATTCTATGAATTCTATTAAT
GCTAGAGGAAAATCATAGCTCCAAGAATTTCTTTGTTCTCAACGCCTTCTATTTAGAGGAATTAGCCACTTCAACGATCTTTGATGGTTATAGGGGTATC
CAAAGTACAAACCTGATGGTTGTTTATTATCCCAACCATTCTTCCCAGCCCTGATATCGATTAGGAAAGGGTTAATTTATAACAAAGTTTTTCTCT