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Detailed information on CNT30149001


BLAST search results

BLAST vs Swiss-Prot:
sp|P14584|CB21_RAPSA, E-value = 2e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673431Brachypodium distachyonSetaria viridis45.2856.1691.98187forward
CNT30522718Brachypodium distachyonSetaria italica47.4626.5992.35196forward
CNT30224983Brachypodium distachyonHordeum vulgare52.335.4192.59216forward
CNT30456255Brachypodium distachyonSaccharum spontaneum47.4623.9693.88196forward
CNT30140865Brachypodium distachyonLolium perenne52.340.5391.67216forward
CNT30371011Brachypodium distachyonOryza glumipatula47.4630.1593.88196forward
CNT30577669Brachypodium distachyonOryza barthii47.4620.8793.37196forward
CNT30579831Brachypodium distachyonEchinochloa crusgalli47.4621.5492.35196forward
CNT30603587Brachypodium distachyonOryza punctata47.4638.5891.84196forward

Expression of CNT30149001

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MENMARRPFLISFTLSSANASGSSAKPRGSRRRGPWWRSPLMYCCTVLS*

>peptide 2 (73 aa)
LVINLHHHRGSTSETSYTHLVASIVDLHIHMCLSLTPYLPGTKLVAKAHALLLTGSARWSARFSRGPLPVTMA*

Sequence

>CNT30149001
CTCGTAATTAATTTACATCATCATCGTGGTAGTACAAGTGAAACCAGCTACACACACTTGGTCGCGAGCATAGTCGATTTGCATATACACATGTGCCTCT
CATTGACACCTTACTTGCCGGGAACGAAGTTGGTGGCAAAGGCCCACGCGTTGTTGTTGACGGGGTCGGCAAGGTGGTCAGCGAGGTTCTCAAGGGGACC
CTTGCCGGTGACGATGGCCTGAACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCAGCGAACGCCTCA
GGGTCGTCAGCCAAGCCAAGGGGGTCGAGGAGGAGAGGGCCATGGTGGCGGTCGCCATTGATGTACTGCTGTACCGTGCTCTCCTAAGAGTGTGAGGCTG
GCTCTGGTGTGCG