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Detailed information on CNT30149


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678235Zea maysSetaria viridis49.0989.490270forward
CNT30522059Zea maysSetaria italica61.4569.5587.28338forward
CNT30189491Zea maysSecale cereale12.3624.5585.2968forward
CNT30224680Zea maysHordeum vulgare32.7326.6782.78180forward
CNT30553198Zea maysOryza glaberrima4048.6783.64220forward
CNT30445586Zea maysSaccharum spontaneum98.5558.7292.99542forward
CNT3067493Zea maysLeersia perrieri39.0950.1281.4215forward
CNT30351983Zea maysEragrostis tef1435.3288.3177forward
CNT30595883Zea maysOryza meridionalis4038.9483.64220forward
CNT30105638Zea maysOryza longistaminata4023.8183.64220forward
CNT30101696Zea maysOryza rufipogon32.1815.2583.05177forward
CNT30575498Zea maysOryza barthii4035.0983.64220forward

Expression of CNT30149

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MHKPTEQPRQPRIPRMGVPMVLLEGLHSAAMDNFQEMA*

>peptide 2 (42 aa)
SQQTKSYGGTIGPSFDCTTSMVSYGYIYQAMGGICPLLCSEA*

>peptide 3 (58 aa)
ANKPKATEEPSAHPSIALHPWSLMDIYTRPWVAYALFCARRLEQQNHQGLIFFFVVDG*

Sequence

>CNT30149
TAGCCAACAAACCAAAAGCTACGGAGGAACCATCGGCCCATCCTTCGATTGCACTACATCCATGGTCTCTTATGGATATATATACCAGGCCATGGGTGGC
ATATGCCCTCTTCTGTGCTCGGAGGCTTGAGCAGCAGAACCATCAAGGCCTGATATTTTTCTTCGTGGTTGATGGTTAGGAACAATTTGATCCTGCATCC
AATCTAAGTGCACCTCATGGAATCTGACATCAACTTGAAACTTGCTAAACCTCTTGATCCCACTAATCATGCATAAGCCAACAGAGCAGCCAAGGCAACC
CAGAATACCAAGAATGGGAGTGCCAATGGTTTTGTTAGAGGGCTTGCATTCGGCAGCCATGGATAATTTTCAGGAGATGGCATGACACAATTATCACCAT
TGAAGTAAACTCGGCGTGGGAAGGCCCATCCCTTTTCGAAAGTGAAAGTCCGGGAGTCCTTGCGGAGAAGCAGCTCTGATTGCACATTCCCAAGTTTGCC
GGCTTGCATCAGCAGATCATTGTAGAATTTTACACCCCAGAACATTGCCG