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Detailed information on CNT30148852


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 2e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696576Brachypodium distachyonOryza sativa54.9554.192.21244forward
CNT30670612Brachypodium distachyonSetaria viridis45.55094.55202forward
CNT30522839Brachypodium distachyonSetaria italica54.9541.7193.85244forward
CNT30286361Brachypodium distachyonTriticum aestivum55.8645.3494.76248forward
CNT30387206Brachypodium distachyonTriticum turgidum55.1843.9194.69245forward
CNT30553196Brachypodium distachyonOryza glaberrima54.9543.7394.26244forward
CNT30437472Brachypodium distachyonAegilops tauschii55.8650.295.56248forward
CNT30250140Brachypodium distachyonAvena sativa55.8648.1694.76248forward
CNT30667347Brachypodium distachyonTriticum dicoccoides56.9855.7393.68253forward
CNT30261175Brachypodium distachyonBrassica rapa30.6328.8180.88136forward
CNT30135596Brachypodium distachyonLolium perenne55.6366.2293.93247forward
CNT3015042Brachypodium distachyonZea mays55.8641.8994.76248forward
CNT30229571Brachypodium distachyonAnanas comosus46.6250.2492.27207forward
CNT30685043Brachypodium distachyonTriticum urartu54.554.3895.04242forward
CNT30620798Brachypodium distachyonCajanus cajan49.141.7683.49218forward
CNT30596905Brachypodium distachyonOryza meridionalis55.8640.7992.34248forward
CNT30325970Brachypodium distachyonAsparagus officinalis37.6124.286.83167forward
CNT30101875Brachypodium distachyonOryza rufipogon55.6334.2694.74247forward
CNT30577582Brachypodium distachyonOryza barthii55.8638.9992.34248forward
CNT30581397Brachypodium distachyonEchinochloa crusgalli55.8642.2594.35248forward
CNT30117527Brachypodium distachyonOryza nivara55.8643.0692.34248forward

Expression of CNT30148852

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MWFHLRFLDRKTREHGGTNIRTLQAGVESGHRISRRSRRGCGPGA*

>peptide 2 (40 aa)
RNKSDFHFHRAQILFHNCTIQTNLLTIDRKLNNVVPSTIS*

Sequence

>CNT30148852
CAGAAACAAATCTGATTTCCATTTCCATCGAGCACAAATTTTGTTCCACAATTGCACGATTCAGACAAACCTACTGACGATAGACAGGAAACTAAACAAT
GTGGTTCCATCTACGATTTCTTGACCGCAAGACTCGTGAGCACGGCGGCACAAACATCAGAACACTGCAGGCGGGGGTCGAATCGGGGCACCGGATTAGC
CGCCGAAGCCGTAGAGGGTGCGGCCCTGGCGCTTGAGGGCGTAGACGACGTCCATGGCAGTGACGGCGTCGCGGATGACGTTCTCGAGGAAGATCTTGAG
GACGCCGCGGGTCTCCTCGTAGATGAGCCCGGAGATTCGCTTCACGCCGCCTCTCCTCGCCAGGCGCCGGATCGCCGGCTTGGTGATGCCCTGAATGTTG
TCGCGGAGAACCTTCCGGTGGCGCTTGGCGCCGCCCTTGCCGAG