« Back to Brachypodium distachyon search


Detailed information on CNT30148805


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5N8Z0|DRB1_ORYSJ, E-value = 6e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690490Brachypodium distachyonOryza sativa13.8244.7886.67120forward

Expression of CNT30148805

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MGAMCALELSPLLQPQCLALKGLFYHFPS*

>peptide 2 (33 aa)
ADSHPRFITKRKNGCTFWQYHVRAAWVDLDSVS*

>peptide 3 (89 aa)
MGSGVESITSSVLGSGIAGLPFSILTDWIGSTRACEATGIVLVVTAKLEVLVGGLEVKWRDVGSGVESITSASVLGSGIAGLPFSILTD*

Sequence

>CNT30148805
GGCTGACAGCCACCCACGCTTCATCACTAAAAGGAAGAACGGTTGCACCTTCTGGCAATACCATGTCAGGGCGGCGTGGGTAGACCTGGATTCGGTTAGT
TAACATCGAGCAGCCGCATCCAACAGAAGTAACAGGCATTGCAGTTGTTGACGCAGCAAGTGTGGAAGTATTATTGAGGGACGTGGGTCCTGGGGTTGAG
CCCATTACTTCAGCCTCAGAGCTTGGTTCTTGAACTGTTGTTTTATCCTTATCCTCCTTGGCAGACTGGACAGGTTGAACAACAGTTTGTGAAGCATCAG
GTGCTTTACTTCTCGACGCTGCAAGGTAGGAAGTATTGGTCGGTGGCCTTGAGGTTAAGTGGAAAGACATGGGTTCCGGGGTAGAGTCCATTACTTCCTC
GGTGCTTGGCTCTGGAATTGCTGGTTTACCATTTTCCATCTTGACAGATTGGATAGGTTCAACAAGAGCTTGTGAAGCAACAGGCATTGTACTTGTTGTC
ACCGCAAAGTTGGAAGTATTGGTTGGTGGCCTTGAGGTTAAGTGGAGAGACGTGGGTTCCGGAGTAGAGTCCATTACTTCAGCCTCGGTGCTTGGCTCTG
GAATTGCTGGTTTACCATTTTCCATCTTGACAGATTGAATAGGTTCAACGAGAGCTTGTGAAGCAATAAGCACTGTACTTGTTGTCACCGCAATCTTTGA
AGTATTGGTTGGTGGCTTTGAGACTAATGGGAGCAATGTGCGCTCTGGAGTTGAGTCCATTACTTCAACCTCAGTGCTTGGCTCTGAAAGGGCTTTTCTA
TCATTTTCCATCTTGACAGATTGGGTAGGTCCAGCAAGAGGTTGTGATGTGCCAACAATGGGGAGAGG