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Detailed information on CNT30148777


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690730Brachypodium distachyonOryza sativa9.8825.2190.9188forward
CNT30672671Brachypodium distachyonSetaria viridis9.5420.9991.7685forward
CNT30286278Brachypodium distachyonTriticum aestivum9.5429.1197.6585forward
CNT30552437Brachypodium distachyonOryza glaberrima9.8820.8590.9188forward
CNT30255378Brachypodium distachyonAvena sativa9.6520.2497.6786forward
CNT30655558Brachypodium distachyonTriticum dicoccoides9.5422.3797.6585forward
CNT30470896Brachypodium distachyonSaccharum spontaneum9.5420.1489.4185forward
CNT3015104Brachypodium distachyonZea mays10.127.279090forward
CNT30595633Brachypodium distachyonOryza meridionalis9.8827.0890.9188forward
CNT30101935Brachypodium distachyonOryza rufipogon9.8820.5688.6488forward
CNT30574749Brachypodium distachyonOryza barthii9.8823.2890.9188forward
CNT30115808Brachypodium distachyonOryza nivara9.8820.8590.9188forward

Expression of CNT30148777

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MVGACLQCSCPRSWIDPHSSWSLVCGSSCRCSRSSRRRCRTCSRRRTRSCRRSKTFFLTTEEEEASCSE*

>peptide 2 (65 aa)
MSTVFCQLDRVEAASIQKQRQQQAARVDQQHSDTYIKTYSLDRARHEEGHGSCRMNNTVVIELVT*

>peptide 3 (57 aa)
MRVCPQFSVSWIELRQQAFRNRGSSRQHEWINNIQTHILKRTALIERGMRKDMDRVG*

>peptide 4 (56 aa)
MPSLASNLLIFSVTIHQKLYRKLFGCIHNTESSHLSVCVSRGKKIPSSVLFCRMRV*

Sequence

>CNT30148777
GCTGCAACTTTTAAGTCTTTCATTTTTCTTTATTTTTTTTGGAGTGAGTTCAATTAGGTTACATAAGCATATGTGATGCCTCCCTCTAGCCTAGCTAGGT
GTGGTAAGCTACAGGGCTAGATCAAGCCGTACGTCGCCTTCACCACCATGTTCGTCATGTCCATGTCCTTATCTGCACACTGACTCAGCTTTTGTACTAC
TCGCATCATGCCTAGCTTAGCTAGCAACTTGCTCATCTTCAGTGTCACCATTCATCAGAAACTGTACCGAAAACTGTTTGGCTGCATTCATAATACAGAA
TCGAGCCATTTAAGTGTGTGCGTTTCTCGAGGAAAAAAAATCCCCAGTTCTGTTCTCTTTTGTCGTATGAGGGTATGAGGGTATGTCCACAGTTTTCTGT
CAGCTGGATCGAGTTGAGGCAGCAAGCATTCAGAAACAGAGGCAGCAGCAGGCAGCACGAGTGGATCAACAACATTCAGACACATATATTAAAACGTACA
GCCTTGATCGAGCGAGGCATGAGGAAGGACATGGATCGTGTCGGATGAACAATACGGTCGTGATCGAGTTGGTGACTTGACAGAAGATTTTATTTTATTT
AGCAGCTAACTGGCTAGTAAGCTAGCTAGCTGGGCGGCGATGGTGGGTGCATGCTTGCAGTGCAGTTGTCCTAGATCCTGGATCGATCCTCATTCCTCAT
GGTCGCTGGTGTGTGGCTCTAGTTGCAGGTGCAGCAGGAGCAGCCGCAGGCGGTGCCGCACTTGCAGCCGGCGCCGCACCCGCAGTTGCCGCCGCAGCAA
GACATTCTTTCTGACGACTGAGGAAGAAGAGGCTAGCTGCAGTGAGTGAGTGAGGAGCTCAGTTAAGGATGTTTCTGCTGCTTGGGTGAGG