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Detailed information on CNT30148668


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673222Brachypodium distachyonSetaria viridis70.1633.9188.79214forward
CNT30521178Brachypodium distachyonSetaria italica30.8219.2289.3694forward
CNT30513228Brachypodium distachyonJuglans regia66.2325.9685.64202forward
CNT30375849Brachypodium distachyonArabidopsis thaliana67.5418.3982.04206forward
CNT30403349Brachypodium distachyonBeta vulgaris68.8560.3484.76210forward
CNT30504596Brachypodium distachyonNicotiana attenuata32.1315.9383.6798forward
CNT30249492Brachypodium distachyonAvena sativa45.5740.7689.21139forward
CNT30136078Brachypodium distachyonLolium perenne62.9574.1392.19192forward
CNT30650401Brachypodium distachyonRosa chinensis67.5423.3885.92206forward
CNT30211728Brachypodium distachyonHelianthus annuus31.1535.9883.1695forward
CNT30721247Brachypodium distachyonTriticum spelta66.5638.6791.13203forward
CNT30367289Brachypodium distachyonSorghum bicolor70.1637.5490.65214forward
CNT3027382Brachypodium distachyonPopulus trichocarpa58.6936.9885.47179forward
CNT30118099Brachypodium distachyonOryza nivara71.4826.7588.99218forward

Expression of CNT30148668

Peptides detected in this lncRNA

>peptide 1 (36 aa)
TKHHGYNKTQIIETNGRLRLVPTLVPTLGRARQASC*

>peptide 2 (35 aa)
MPAPYVTPSRKTDRSFSSEREFSMVMTSASILMME*

Sequence

>CNT30148668
ACCAAACACCACGGGTACAATAAGACCCAGATTATTGAAACAAATGGCCGCTTGCGTCTTGTTCCAACTTTGGTTCCAACTTTAGGACGAGCACGGCAAG
CATCTTGTTGACGCGGTCAGCAATCTCCTCTGTGGAGGGGATCCTGGGAGAGTGGATATCATAGACGCCAGGGCCAATGCCAGCACCGTATGTCACACCC
TCACGGAAGACGGACAGGAGCTTCTCATCAGAACGGGAGTTCTCAATGGTGATGACATCGGCATCCATATTAATGATGGAGTGAATGATATCGTTGAAGT
TAGAG