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Detailed information on CNT30148640


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692506Brachypodium distachyonOryza sativa27.8729.5194.1285forward
CNT30727469Brachypodium distachyonCorchorus capsularis25.2525.3392.2177forward
CNT30185973Brachypodium distachyonSecale cereale90.82100.7391.34277forward
CNT30307713Brachypodium distachyonTriticum aestivum99.0299.6792.38302forward
CNT30227167Brachypodium distachyonHordeum vulgare96.0794.5291.13293forward
CNT30391067Brachypodium distachyonTriticum turgidum99.677691.12304forward
CNT30443416Brachypodium distachyonAegilops tauschii99.3499.6791.75303forward
CNT30662759Brachypodium distachyonTriticum dicoccoides99.0299.6792.05302forward
CNT30689288Brachypodium distachyonTriticum urartu98.6996.4791.03301reverse complement
CNT30368744Brachypodium distachyonSorghum bicolor83.6170.4488.24255forward
CNT30369610Brachypodium distachyonOryza glumipatula100.3374.6384.97306reverse complement
CNT30100780Brachypodium distachyonOryza rufipogon10054.8686.23305reverse complement
CNT30116196Brachypodium distachyonOryza nivara100.3358.486.27306forward

Expression of CNT30148640

Peptides detected in this lncRNA

>peptide 1 (50 aa)
LSSVARACNPSGGFKGGVDVAVALRAWSGCATDGPPVPSCVVGRWSLSES*

Sequence

>CNT30148640
GCTGAGCTCAGTAGCGAGAGCTTGTAACCCGAGTGGGGGCTTTAAGGGTGGTGTGGACGTTGCCGTAGCGCTGCGGGCCTGGTCTGGGTGTGCTACTGAT
GGCCCGCCCGTTCCAAGTTGCGTAGTGGGCCGTTGGAGCTTAAGCGAAAGCTAGGCTTCGCGGCCCATAATGTTGGCAGGCACAGCGTGAGGCTGGCTTC
ACAGAGCAGCGACAACTGCCCGCTTCCAACGGTGGAAGGATAACGGGCCGCTGCACTCCTTGGCCGCTTGGGCCTCGCAGCCTACTCCAGCGAACCACCA
CTTTT